Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00982 and BPUM_3167
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00982___ydhB.1.24716.seq
# -bsequence dna-align/BPUM_3167.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00982___ydhB-BPUM_3167.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00982___ydhB-BPUM_3167.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00982___ydhB
# 2: BPUM_3167
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 789
# Identity: 512/789 (64.9%)
# Similarity: 512/789 (64.9%)
# Gaps: 99/789 (12.5%)
# Score: 1532.0
#
#
#=======================================
BSNT_00982___ 1 ------------------ATGCTCATTATTCTTGTTATGTTTCTTCTAGG 32
||||| ||||| ||||
BPUM_3167 1 ATGTATATTATATTGACGATGCT-ATTAT-----------------TAGG 32
BSNT_00982___ 33 AATTATTTTAGGCTTTATTGGCGCCGGTGGAGCCGGCTTTGTCATTGCCC 82
||||.|.|||||.|||.|.||.||.||.||.||.||.|||||||||| |
BPUM_3167 33 AATTTTATTAGGTTTTGTAGGAGCAGGCGGGGCTGGTTTTGTCATTG--C 80
BSNT_00982___ 83 TTT--TAACGCTTCTTTTCCATATCCCGATTCATACGGCTTTAGGCACTT 130
||| |.|||.|..||||..|||||||.||.|||||.||..|.||.||.|
BPUM_3167 81 TTTGCTTACGTTAATTTTTGATATCCCTATCCATACCGCACTTGGGACGT 130
BSNT_00982___ 131 CGCTTGCCGGCATGGCTTTTACAAGCTTATCAGGGGCATACAGCCACTAT 180
|..|.||||..|||||.|||||.|..|||||.||.||||||||.|||||.
BPUM_3167 131 CTTTAGCCGCAATGGCATTTACGACGTTATCTGGTGCATACAGTCACTAC 180
BSNT_00982___ 181 CGCGAGGGCAACATTCAAATGAAAATC-GGCTTAATAGTCGGAGGCTTTG 229
||.||.||.||.|||||..|| ||||| ||.||.||.||.||| ||||||
BPUM_3167 181 CGGGAAGGGAATATTCAGCTG-AAATCTGGTTTGATCGTTGGA-GCTTTG 228
BSNT_00982___ 230 --CTGCGGTTGGC-TCATTTTTCGGCGCCAAGCTGACATCTTTTATTCC- 275
.|||| |||| ||.|||...||.||.|||.|..|..||||||||||
BPUM_3167 229 GCTTGCG--TGGCTTCCTTTGCAGGAGCTAAGATTGCTCCTTTTATTCCA 276
BSNT_00982___ 276 --GGCTGATTTGCTTCATTATTTGACGGCTGGAATGTTATTTTTATCAGC 323
||...|| ||.||.|||||.||.|||||.|||.|.||||||||.||
BPUM_3167 277 GAGGGAAAT---CTGCACTATTTAACAGCTGGCATGCTCTTTTTATCCGC 323
BSNT_00982___ 324 AATTCTCATTTTAATCAGATTATTTATTTTAAAAG-AGAAGGCTCAAGTG 372
..|..|.||..|.||||.|||||||.||.|.||.| ||| ||.||
BPUM_3167 324 TGTGTTTATGATGATCAAATTATTTGTTCTGAAGGAAGA------AACTG 367
BSNT_00982___ 373 AATCA--AAGCACTCT-TTCA----------ACGTATACGAGAGCGG--T 407
|.|| ||.||||.| |||| .|||| ||.|| |
BPUM_3167 368 -AGCAGCAACCACTTTCTTCACGTCAGCTGCTCGTA------AGGGGAAT 410
BSNT_00982___ 408 CATCTTAGGAATTGCAGCCGGCGTTCTTTCCGGCACATTCGGCATCGGGT 457
.||.||||||.|||.|.||||..|.||.||.||.|..||.||.|||||||
BPUM_3167 411 TATTTTAGGACTTGTATCCGGTTTGCTGTCAGGTATGTTTGGTATCGGGT 460
BSNT_00982___ 458 CGGCACCTTTTATTCAAATCGG--TTTAATGATTATGCTGAATCTGTCCA 505
|.|||||.|||||.|||.|.|| ||| |||||.|.||||..||.||||
BPUM_3167 461 CCGCACCATTTATCCAAGTAGGACTTT--TGATTTTACTGAGACTATCCA 508
BSNT_00982___ 506 TTCGCCATTCTGTCGGAACGACGATGCTTGTGATCATCCC--TTTGGCTG 553
||||.||..|.||.||.||.|||||||||||.||.||.|| ||| |..
BPUM_3167 509 TTCGACAGGCAGTTGGCACAACGATGCTTGTCATTATTCCGATTT--CCA 556
BSNT_00982___ 554 TAGGTGGAGGCATCGGATATATTACAGAAGGTTTTGTTGATTACGTTTTG 603
|.|||||.||.||.||||||||||||||.||.|.||||||||...|.|||
BPUM_3167 557 TCGGTGGTGGAATTGGATATATTACAGAGGGCTATGTTGATTTTATCTTG 606
BSNT_00982___ 604 CTTG--TCAAAGTTCTGGTCGGGACAATGTGCGGTGCCTATGTAGGCGCG 651
| || ||||| ||.|..||||.|||.|.|..||.||.|||.|.|||||.
BPUM_3167 607 C-TGATTCAAA-TTTTAATCGGAACAGTATTAGGCGCATATATTGGCGCA 654
BSNT_00982___ 652 AAATTCACCAACCTCATG--CCAAAGGTGGTTTTGAAATCAGCCATCTTT 699
|||||.|| ||..|.|| ||.|||.|..|.||||||||.||..|..|.
BPUM_3167 655 AAATTTAC--ACGCCTTGCACCGAAGCTCTTATTGAAATCGGCTGTACTG 702
BSNT_00982___ 700 TTGACTCCGGCGATTGCAGGCCTGCTGTTGTTATTCTAA 738
||.||.||....|||||.||..|.|||.|||||||.|||
BPUM_3167 703 TTAACACCTATTATTGCCGGTTTACTGCTGTTATTTTAA 741
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