Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05143 and BPUM_3159
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05143___yvbW.1.24716.seq
# -bsequence dna-align/BPUM_3159.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05143___yvbW-BPUM_3159.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05143___yvbW-BPUM_3159.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05143___yvbW
# 2: BPUM_3159
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity: 923/1439 (64.1%)
# Similarity: 923/1439 (64.1%)
# Gaps: 184/1439 (12.8%)
# Score: 2730.5
#
#
#=======================================
BSNT_05143___ 1 ATGAAAAACGACAAT---CAAACGTTAAAACGCACGATGACGTCCCGCCA 47
|||.||||.||..|| || |||||||||.||.||||||||..|.||
BPUM_3159 1 ATGGAAAAGGAACATGTGCA---GTTAAAACGAACAATGACGTCAAGGCA 47
BSNT_05143___ 48 TATTATGATGATGGCGCTGGGCGGAGCAATCGGCGCAGGTTTATTTAAGG 97
|||.||||||.|.||.||.|||||.||.|||||.||.|||.|.|||||.|
BPUM_3159 48 TATCATGATGCTCGCACTTGGCGGTGCCATCGGTGCTGGTCTGTTTAAAG 97
BSNT_05143___ 98 GGAGCAGCTCAGCGATCGATGTGGCAGGGCCATCTGTCATTATCGCATAC 147
|.|||||.||.||.||.|||.|.||.||.||..||||||||.|.|||||.
BPUM_3159 98 GAAGCAGTTCTGCCATTGATATCGCGGGTCCTGCTGTCATTTTGGCATAT 147
BSNT_05143___ 148 CTGCTCGGCGGGATTATTTTGCTGTTTATTATGCAGGGACTGGCGGAAAT 197
.||.|.||.||..|||||||..|.|||||||||||.|||||.||.||.||
BPUM_3159 148 ATGATTGGTGGTCTTATTTTATTATTTATTATGCAAGGACTTGCCGAGAT 197
BSNT_05143___ 198 GGCTGTT---CGAAACCGTAACGCCAGAACCTTCCGTGATCTTGTCCAGC 244
|.|.||| ||| |.|..|||.|||||.|||||||||.|..|..|.|
BPUM_3159 198 GACAGTTGCACGA---CCTGGCGCTAGAACATTCCGTGATTTAATTGAAC 244
BSNT_05143___ 245 AGGTATTGGGAAATTACGCCGCTTACTTTTTGGACTGGATCTACTGGAAA 294
..||.||.||.||.|||.||||.||.||.||.||.||||||||.||||||
BPUM_3159 245 CTGTGTTAGGCAAATACCCCGCCTATTTCTTAGATTGGATCTATTGGAAA 294
BSNT_05143___ 295 ATGTGGGTGCTTAACATTGCGGCTGAAGCTGTTGTAGCTGCGATTTTCAT 344
|||||||||.|.||||||||.||.|||||..|.||..||||.||.||.||
BPUM_3159 295 ATGTGGGTGTTAAACATTGCAGCAGAAGCGATCGTGTCTGCCATCTTTAT 344
BSNT_05143___ 345 TCAATATTGGCTGCCGGGCTGC-----CCGATCTGG------GTGTTGGC 383
|||.||.|||.|.|| .| ||.||.||| |||
BPUM_3159 345 TCAGTACTGGTTTCC-----ACAAGTACCAATTTGGACACTTGTG----- 384
BSNT_05143___ 384 ATTAGGAATTTCTCTTATCGTCACGATTG-TAAACTTGCT--TTCTGTTA 430
|||...|||||.|||.|.||||| |||| |.|| ||.| |||.||.|
BPUM_3159 385 -TTAATCATTTCACTTGTTGTCAC-ATTGATCAA--TGTTTGTTCAGTCA 430
BSNT_05143___ 431 AAATCTTCGCCGAAACTGAATATTGGCTGGCAATGATCAAGATTACCGTT 480
||||.||.||.||.||.||.||.|||.|.||....||.||.|||.|.||.
BPUM_3159 431 AAATGTTTGCTGAGACAGAGTACTGGTTAGCCTCTATTAAAATTGCTGTC 480
BSNT_05143___ 481 ATTATTATCTTTATTATTC--TGGGAT-----TGCTGCTCTTATTTGTAT 523
|||.||.|.||||||| || ||||.| ||||| |||||.|
BPUM_3159 481 ATTCTTTTATTTATTA-TCATTGGGTTAACGATGCTG------TTTGTCT 523
BSNT_05143___ 524 CATTCGGTGATCATACAGCATCCGGATTTTCCAACCTGACAGACCACGGC 573
|||||||..|.|||.|||||.|.|||||.||||||.|.||.||||||||.
BPUM_3159 524 CATTCGGACAGCATGCAGCACCTGGATTATCCAACTTAACCGACCACGGA 573
BSNT_05143___ 574 GGATTTTTCCCGCACGGCGGCACAGGGC----TGATCACGGCGATGCTTG 619
||||||||||||.|.|| |..|||| |.||..||||.|||||.|
BPUM_3159 574 GGATTTTTCCCGAATGG----AACGGGCGGCTTAATTGCGGCAATGCTAG 619
BSNT_05143___ 620 TCGTCATCTACTCTTACGGCGGTACAGAAATTATCGGTGTAACGCTTGCA 669
|.||..|.||.||.||.|||||.||.|||||.||.||.||.||..|.|||
BPUM_3159 620 TTGTTGTGTATTCATATGGCGGAACTGAAATGATTGGGGTGACATTAGCA 669
BSNT_05143___ 670 GAGACAAAAAATCCGGAAAAGGTTGTCCCGAAAGCTGTCCGCAGCACACT 719
||.||.|||||.||.|||||.||..||||.|||||..|.|..||.|||.|
BPUM_3159 670 GAAACGAAAAACCCTGAAAAAGTCATCCCAAAAGCCATTCAAAGTACATT 719
BSNT_05143___ 720 GACACGGATTGTCGCGTTTTACCTGCTGCCGTTTTTCATCATCGTCAGCC 769
...|||.||..|||..|||||..|.||.|||||.|||||||||||||||.
BPUM_3159 720 TGTACGAATCATCGGTTTTTATGTACTTCCGTTCTTCATCATCGTCAGCT 769
BSNT_05143___ 770 TGATTCCATGGAACCAAGT---CAATTCGGTTCCGGAA------AGTCCT 810
|.|||||.|||||.||||| |||| ||| ||.||.
BPUM_3159 770 TAATTCCTTGGAATCAAGTAAACAAT---------GAACAAGTGAGCCCA 810
BSNT_05143___ 811 TTCGTGATGGTCTTTAAAATGGTAGG-----CAT-TCCGGGCGCGGACCA 854
|||||.|.|||.|||..||.|.|.|| ||| |.|..|.| |
BPUM_3159 811 TTCGTTACGGTGTTTGCAACGATTGGTGTGCCATATGCAAGTG------A 854
BSNT_05143___ 855 TATCATGAATGCAGTCATCCTGCTGGCGATCATTTCTTCTATGAATTCAG 904
|||.|||||.|...|.||..|..|.||.|||.|.|||||||||||.||.|
BPUM_3159 855 TATTATGAACGGGATTATTTTATTAGCAATCTTGTCTTCTATGAACTCTG 904
BSNT_05143___ 905 GTTTATACGGATCATCACGCATTTTGTATACACAGGCAAGTGACGG---- 950
||.|.||||..||.|||.|..|..|.|.|||||||||||..||.||
BPUM_3159 905 GTCTGTACGCTTCTTCAAGGGTACTATTTACACAGGCAATGGATGGCCGT 954
BSNT_05143___ 951 --AAGGCTTCCAAAGGTCTTCTCGAAGCTTTCATCGAAA-AAC--GTACC 995
|.|| ||||| .|||||.||.||.||| ||| ||| ||.||
BPUM_3159 955 GTATGG-----AAAGG-ATTCTCTAAACTGTCA---AAACAACAAGTGCC 995
BSNT_05143___ 996 GATGTT--TGCGATTCTGATGTGCACTTCTTCTCTCTATATTGGC----G 1039
|||| .|||||.||..|.||.||.|||.|..|.||| || |
BPUM_3159 996 --TGTTCGAGCGATCCTTGTATGTACATCTACCTTGTAT----GCAGCTG 1039
BSNT_05143___ 1040 TATTGATTTCTCTGTTCGCAGGAAGCCAAACATTTAATTATTTAATGGGA 1089
|||||||||||||.||.|.|||.||.|||||.||||||||.||.|||||.
BPUM_3159 1040 TATTGATTTCTCTTTTTGTAGGTAGTCAAACGTTTAATTACTTGATGGGC 1089
BSNT_05143___ 1090 TCATTGGGATATACCGTTTTATTCATTTGGCTGATCATCGGATTCGCTCA 1139
||.||..|.||.||.|||.|||||||.|||.|.|||||.|...|.|.|||
BPUM_3159 1090 TCTTTAAGTTACACAGTTCTATTCATCTGGTTTATCATTGCCGTTGGTCA 1139
BSNT_05143___ 1140 TTTAAAATCGAGAA------AACAG-CAAACGGAAACACCGGCCTATTAT 1182
|||.|||||..||| .|||| ||..|||| |||...
BPUM_3159 1140 TTTGAAATCTCGAAGCGTCGCACAGCCAGGCGGA----------TATCGC 1179
BSNT_05143___ 1183 GTAAAATGGTTCCCGTACACGACATGGT---------TTGCGATTGTGGC 1223
||.||...||..||.|.|||.||.|||| |||||||..||
BPUM_3159 1180 GTGAAGCTGTATCCTTTCACAACGTGGTTTTCCGTCATTGCGATCATG-- 1227
BSNT_05143___ 1224 ATTACTCGCCATTCTGATCGGAGTCATCATGACA-ACATCAATTGTCATT 1272
||||||.|..||||.||..| ||.|.| |||.||||||||...
BPUM_3159 1228 -------GCCATTTTTGTCGGCGTTGT-ATTAAATACACCAATTGTCCAA 1269
BSNT_05143___ 1273 ACCGGC--ATTAC----TGCGGCGATCTACCTTT--TGATTACAGTTGC- 1313
|| || .|.|| ||| ||.|| ||| |.||||||.||.|
BPUM_3159 1270 AC--GCTGGTCACAATGTGC----ATTTA--TTTAATCATTACACTTTCT 1311
BSNT_05143___ 1314 ----ATATT--TGGTCAAAGGACGCAAGCATCAGTAA-- 1344
.|||| |.|..|||||....||.||.|.|||.
BPUM_3159 1312 TTCTTTATTAATAGAAAAAGGTTTGAAACAGCCGTATAG 1350
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