Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05357 and BPUM_3153
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_05357___yvkA.1.24716.seq
# -bsequence dna-align/BPUM_3153.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05357___yvkA-BPUM_3153.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05357___yvkA-BPUM_3153.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05357___yvkA
# 2: BPUM_3153
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1504
# Identity: 878/1504 (58.4%)
# Similarity: 878/1504 (58.4%)
# Gaps: 338/1504 (22.5%)
# Score: 2204.5
#
#
#=======================================
BSNT_05357___ 1 ATGAGCTCAAGAAAAGAATGGGCGC-TGATCGTC---TCGCTATTATTGG 46
.||||.|.|..|||||| |.|| |||||.|| ||..|.|||.|.|
BPUM_3153 1 TTGAGGTTACAAAAAGA----GAGCTTGATCATCTATTCTTTGTTACTTG 46
BSNT_05357___ 47 GGGCCATTCTGGTTCCCATTAACTCAACGATGATCGCGGTCGCGCTCTCA 96
|.||.||.||.|||||..|.|||||||||||||||||.|||||.||.|||
BPUM_3153 47 GAGCTATACTAGTTCCGGTCAACTCAACGATGATCGCAGTCGCTCTATCA 96
BSNT_05357___ 97 TCTATTTC-CCATACGTATAACGAGTCCATCGCAAGCATCACTTGGGTGG 145
||.||.|| .|||| .|||.|..|.|||||..|||.|||.||||||||.|
BPUM_3153 97 TCCATATCAACATA-TTATGATCAATCCATTTCAAACATTACTTGGGTTG 145
BSNT_05357___ 146 TTACCGTTTATTTAATCGTGATGGCAGTCACACAGCCGATTGCAGGAAAG 195
|.|||.|||||.|.||.||.|||||.|||||.|||||.||.||.||.||.
BPUM_3153 146 TCACCATTTATCTTATTGTCATGGCGGTCACCCAGCCTATCGCTGGTAAA 195
BSNT_05357___ 196 CTCGGTGACATGTACGGCAATAAAACA-------ATGTACTTATGGGGAG 238
.|.||.||.||.||||| ||| |||||.|||...||||
BPUM_3153 196 TTAGGAGATATATACGG-------ACACCGCCGCATGTATTTAACCGGAG 238
BSNT_05357___ 239 TCGGC-CTTTTTCTAATCGCATCTCTAGGCTGCGCCCTTT--CACCGAGT 285
| |.| ||.|||.||||.|..||..|.|||||.| |||| ||||.|.|
BPUM_3153 239 T-GACACTCTTTTTAATTGGCTCGATTGGCTGTG--CTTTAGCACCTAAT 285
BSNT_05357___ 286 CT-GC---TCCTGTTAATTGTCTTTCG-GGCATTGCAGGCTGTCGGCGGG 330
|| || || |.||..||||||| ..|||| ||.||.|..||||||
BPUM_3153 286 CTAGCATTTC----TCATCATCTTTCGCTCCATT-CAAGCAGCTGGCGGG 330
BSNT_05357___ 331 GC-ATTGCTT-ACGCCAAACAGCATTGCCATTATCCG-GCA--TGTTGTT 375
|| ||| || ||.|||||.||.||.||..|.||.|| ||| .|
BPUM_3153 331 GCTATT--TTAACACCAAATAGTATCGCTTTGATTCGTGCAACAG----- 373
BSNT_05357___ 376 TCT-----GAAAAAC-GCCTACCGAAA------GT--GTTTGGATTTTTC 411
||| ||||||| |.||| ||| || .|||||||||
BPUM_3153 374 TCTCACCCGAAAAACTGTCTA---AAACAATGGGTTACTTTGGATTT--- 417
BSNT_05357___ 412 GGACTGGGCGCAGGACTTGGTGCAGCACTCGGGCCTTTTATCGGCTCTAT 461
||.||.||..|||||||.||.||.|||||||||||.||.||.||
BPUM_3153 418 ------GGTGCTGGTATTGGTGCCGCTCTTGGGCCTTTTATTGGTTCGAT 461
BSNT_05357___ 462 ACTGATTGACAGCTTCAGCTGGCATTCGATTTTTTGGGTCAACATCCCGT 511
.||.|||.|.||.||....||||||||.||.||.|..||.||.|||||.|
BPUM_3153 462 TCTCATTCAGAGTTTTGATTGGCATTCTATATTCTTAGTGAATATCCCAT 511
BSNT_05357___ 512 TCCTCGCCATTGCTT----TATTTACGGCATTAACGATG-TTTCCTCAAT 556
|||| |||.||| ||.|.|| ||.|| |||.||.|.|
BPUM_3153 512 TCCT----ATTTCTTACACTAGTCAC--------CGGTGTTTTACTTATT 549
BSNT_05357___ 557 ATAAAGAAAATAAATCTGACGCG-----CCGC-----TGGATATCATCGG 596
..|||| .||||.|..||.|| .||| |.|||.|.||.||
BPUM_3153 550 CCAAAG---GTAAAGCATACACGTATACACGCAAGAGTAGATGTAATTGG 596
BSNT_05357___ 597 CTCTCTCTTGCTTGCAGGCAGCATCG---TT---TCAATTATCC--TGCT 638
.|| .|||..|..| |.||||| || .||.|.||.| ||||
BPUM_3153 597 TTC---ATTGTATTTA---ACCATCGGAATTGCCACAGTCATTCTATGCT 640
BSNT_05357___ 639 GACGAA----------AAATGAGGCTCCATGGGGATATGCGGTATACAGT 678
.|..|| |||||| |||| |.|| |
BPUM_3153 641 CAAAAAGCCAGCTATTAAATGA------------ATAT------TTCA-T 671
BSNT_05357___ 679 GTAT-------TGATACTTCTTTTTGTTCCGCTTTTTTTCAGA-----AG 716
.||| ||..|.|..||.|..||||..|.|||||.||| |.
BPUM_3153 672 TTATGGCATTCTGGCAATGATTGTCATTCCTTTATTTTTTAGACATGTAC 721
BSNT_05357___ 717 AGAAAAACGTACCAAGCACCCTATCATTGACTTTG-CACTGTTTAAA--- 762
.|||| ||| |||.|.||.|||||.|| |||| |.||.||||||
BPUM_3153 722 GGAAA---GTA--AAGAATCCGATCATCGA-TTTGTCCCTATTTAAAAAC 765
BSNT_05357___ 763 AGCTCAACCTTTACAAATGCGAATCTATCAGTCTTGTTAAGCAATTTGAT 812
||.||| ||||||||||||||||||||..||.||.||||.|||||..|
BPUM_3153 766 AGTTCA---TTTACAAATGCGAATCTATCGATCATGCTAAGTAATTTTGT 812
BSNT_05357___ 813 GATGTATGCCGTCTTATTGATTATGCCGTTATTTATGACGAAC--CAATT 860
|||||||||..||.|..|.|||||||||.|.|||||| |||| |||.|
BPUM_3153 813 GATGTATGCTATCCTCCTCATTATGCCGCTGTTTATG--GAACAACAACT 860
BSNT_05357___ 861 TGGGCT---TAATACGTCTAAC--AGCGGGATGGCGCTTTCTGTATTTTC 905
||..|| |.|||| || ||.||.|||...||.||.||||||||
BPUM_3153 861 TGCCCTTTCTCATAC-----ACAAAGTGGTATGATTCTATCGGTATTTTC 905
BSNT_05357___ 906 GATCTT--CATGTC----AGCCAGCAACTGGG-----TGGGCGCGCAG-C 943
|||| .||||| ||| || |.||||| .|| |
BPUM_3153 906 --TCTTTGTATGTCTCTTAGC---------GGTTTATTAGGCGC-AAGAC 943
BSNT_05357___ 944 TCCATCACAAATGGGGAGCCAAAAAAATCAT----TTTTC-TTTCATTTG 988
||||||..|||...||.||.||||||||.|| ||||| |||| |.||
BPUM_3153 944 TCCATCCAAAAAAAGGCGCGAAAAAAATGATTCGCTTTTCATTTC-TCTG 992
BSNT_05357___ 989 CC-------ATGATGGCTGGTGCGAATC-TATTATTTTTGCTGTTAAGCA 1030
|| ||.| ||| ||| |.|||.||...|||
BPUM_3153 993 CCTCACTTTATCA-GGC--------ATCATGTTAATTACACTG------- 1026
BSNT_05357___ 1031 GCTCGCATTCTGT-------CTT---ATTCCTCATGCTCTCTCTTATCCT 1070
|.||.|| ||| |.|.||.|||.|..|.||..||.|
BPUM_3153 1027 ------AGTCAGTATCCAACCTTACCACTGCTTATGGTGACACTAGTCGT 1070
BSNT_05357___ 1071 TGGCGGGCTCGCTTCCGGAGTCGGTCTGACCAGCATGCAGGTGTCATCCC 1120
.||.|||.|..|.||.||..|.|||.||||.||.||||||.||.| |.|.
BPUM_3153 1071 GGGGGGGATTTCATCAGGGATTGGTATGACAAGTATGCAGATGGC-TTCA 1119
BSNT_05357___ 1121 TTGCCA-CAGTAGACCCCGGAA----TGTCAGGAGTGGCATCCGGGATTT 1165
||..|| |.||.||.| || |.||.||...||||||.||.||||
BPUM_3153 1120 TTAACAGCTGTTGATC----AAAGTTTATCTGGTTCGGCATCTGGTATTT 1165
BSNT_05357___ 1166 TCTCGACCTTCCGTTATTTCGGAAGCATCATTTCATCAGCCTTAATTGG- 1214
||||.|||||.||.|||||.||.||.||||||||.||..|.||.|||||
BPUM_3153 1166 TCTCAACCTTTCGATATTTTGGCAGTATCATTTCGTCGACATTGATTGGT 1215
BSNT_05357___ 1215 --CCTGA----TTTCGGGATATCACATCCTATTTA-TGATTCTCTT---- 1253
|.||| |||| || ||| |||| |.|||.|.||
BPUM_3153 1216 ATCATGAGTGGTTTC-------CA-ATC---TTTATTTATTGTATTAATG 1254
BSNT_05357___ 1254 --TGCTGTATCCATCATCGGCGT--TTTTGTTTCATTGGGCATCAAATCT 1299
|||.|.| |||.|.|||.| ||||.|..|| ..||.|||||
BPUM_3153 1255 GGTGCAGGA---ATCCTTGGCTTCCTTTTATCCCA--ACGCGTCAAA--- 1296
BSNT_05357___ 1300 GATGAAA------------------CGGCACGGATAGAAAAAAACTCAGC 1331
|.|||| .||| |.||.||
BPUM_3153 1297 -ACGAAATCTACCTCCCCATCATCTGGGC--------------ATTCCGC 1331
BSNT_05357___ 1332 GTAA 1335
.|||
BPUM_3153 1332 CTAA 1335
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