Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05356 and BPUM_3152
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_05356___yvkB.1.24716.seq
# -bsequence dna-align/BPUM_3152.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05356___yvkB-BPUM_3152.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05356___yvkB-BPUM_3152.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05356___yvkB
# 2: BPUM_3152
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 373/657 (56.8%)
# Similarity: 373/657 (56.8%)
# Gaps: 171/657 (26.0%)
# Score: 968.0
#
#
#=======================================
BSNT_05356___ 1 ---TTGAGACCGACAAA-CAAGAGAATCCTTGATGCTGCCATGCA----- 41
||.|.|.|.||||| ||| .|||||.||...||..|.|||.|
BPUM_3152 1 TTGTTAAAATCTACAAATCAA-CGAATCATTCGCGCAACAATGGATTTAT 49
BSNT_05356___ 42 --GCTGCTCGTCAAAAAAGGATATCGCGCAACAACTACAAAAGAAATTGC 89
.||| ||||.||.||||....|||.||.|||||||||||.||
BPUM_3152 50 TGACTG-------AAAAGGGCTATCAAAAAACCACAACAAAAGAAATAGC 92
BSNT_05356___ 90 AGAAAAAGCAAATGTAAGTGAAGCGACGATTTTCAGGAACTTTAAAAACA 139
..|||||||.|||||.||||||||.||.||||||.|.|||||||||||||
BPUM_3152 93 TAAAAAAGCGAATGTCAGTGAAGCAACTATTTTCCGCAACTTTAAAAACA 142
BSNT_05356___ 140 AACAAGGACTAGTTGAGGCTTTGCT-TTCTCA----GCATTCTTC----- 179
|||..||..|..||| .|||| ||.|.| |.|.||..|
BPUM_3152 143 AACGCGGCGTTATTG-----CTGCTATTATGAAAATGAAATCAACGCCAA 187
BSNT_05356___ 180 ---AAAC---AGAGGCAGCATTTTGGAACAAACAGAAGGGGATTTGTACA 223
|||| |||.||||.||| || |||||||||||||||
BPUM_3152 188 CAAAAACCTTAGAAGCAGAATT----------CA-AAGGGGATTTGTACA 226
BSNT_05356___ 224 AAGACCT---GCTTCATATCGGAACCTGTCTCTTGGAGGAGCTCGAACAT 270
..||..| |.||| ||||..|||.|.|| ||.||||||
BPUM_3152 227 CCGATTTAAAGTTTC---TCGGTTCCTATATC---------CTTGAACAT 264
BSNT_05356___ 271 ---------AGAAAAGATATCATTAAAATCAGCTTTCGTGAACCGGCCAT 311
|.||||||..|.|||.|.||||||.|.||.||||||||.||
BPUM_3152 265 TTAACTTCAAAAAAAGAATTTATTTATATCAGCATGCGAGAACCGGCAAT 314
BSNT_05356___ 312 GTTTCAGGATGTCATTAACCACGTCACTGAA------TATCCCCAATCTA 355
||||.|.|||.|.|.|| |||| |||| |||||.|||
BPUM_3152 315 GTTTAAAGATCTGACTA-----GTCA-TGAAAAAATTTATCCTCAA---- 354
BSNT_05356___ 356 TGAAACAGCTATTG-----GTTGAT----TATCTCAAAACAATGGGTGAG 396
||| |||..| |.|||| ||..||||||..|||.|.|
BPUM_3152 355 -GAA----CTAAGGGAAATGCTGATACAATACTTCAAAAAGATGAGCG-- 397
BSNT_05356___ 397 AAAGGGGTTATTCAG------------ACAGGAAATGAAGCGGAGC---- 430
||||| |.||||||.|||| .|
BPUM_3152 398 ----------TTCAGCAGCATGTCTTAAAAGGAAAAGAAG----ACATTT 433
BSNT_05356___ 431 ATGCCGACGTGTTCAT--GT-CGATTATCTTCGGTTATTTCATTCACCGT 477
||||.|||.|.||||| || || ||| ||.||||.|||.|.|||.|..
BPUM_3152 434 ATGCAGACATTTTCATTAGTACG--TAT-TTTGGTTTTTTTACTCAGCAG 480
BSNT_05356___ 478 CTCCACTTAG-GAGA---CCGGGTCATATCAATGCCCCAGGAAAAAATG- 522
|| |.|| .||| ||.|.||.|||.|| ||..||||.|||
BPUM_3152 481 CT----TGAGCAAGACTTCCAGCTCGTATTAA-----CAAAAAAAGATGA 521
BSNT_05356___ 523 ----CTGGAG-----CACAGCACAGCTCTATTTGTCAAAGGAATTTCTGC 563
.|.||| |||| |||| |.||..|.|.||||||||||.|
BPUM_3152 522 TTTTATTGAGACATACACA-CACA----TTTTCATGAGAGGAATTTCTCC 566
BSNT_05356___ 564 TGATTAA 570
.|.||||
BPUM_3152 567 CGCTTAA 573
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