Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05329 and BPUM_3138
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_05329___nagA.1.24716.seq
# -bsequence dna-align/BPUM_3138___nagA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05329___nagA-BPUM_3138___nagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05329___nagA-BPUM_3138___nagA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05329___nagA
# 2: BPUM_3138___nagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1332
# Identity: 770/1332 (57.8%)
# Similarity: 770/1332 (57.8%)
# Gaps: 285/1332 (21.4%)
# Score: 1946.0
#
#
#=======================================
BSNT_05329___ 1 ATG-GCAGAGAGTCTTCTTATT--------AAAGACATTGCGATCGTGAC 41
||| |||| ||..||||| |.|..||| ||.|||||
BPUM_3138___n 1 ATGAGCAG-----CTCTTTATTGCTCTCCAATATTCAT----ATTGTGAC 41
BSNT_05329___ 42 AGAAAATGAAGTAATCAAAAACGGCTATGTCGGAATCAATGACGG-AAAA 90
|.|.|.||||.|.||...||||||.|.||||||..|....||||| ||.|
BPUM_3138___n 42 AAAGACTGAAATGATTGCAAACGGTTTTGTCGGTTTACGCGACGGCAAGA 91
BSNT_05329___ 91 ATCAGCACAGTCTCAACAGAACGGCCCA-AGGAGTCA--TATTCAAAAG- 136
.|.|..|.| |.||||||..||..||.| |||| | |||..|||||
BPUM_3138___n 92 TTGACTATA-TTTCAACAACACCACCGACAGGA---AATTATGAAAAAGT 137
BSNT_05329___ 137 --AGATTCAAGCACCTGCGGATTCCGT---TTTGCTTCCCGGCATGATTG 181
|.||| .||.| |||...|.| |||.||||||||.|||||||
BPUM_3138___n 138 ATATATT-----TCCCG-GGAAAACTTTTATTTACTTCCCGGAATGATTG 181
BSNT_05329___ 182 ACATTCATATCCACGGCGGCTATGGCGCAGATACAATGGATGCTAGCTTT 231
|.|||||.|||||.||.||.|||||.|||||||..|||||||
BPUM_3138___n 182 ATATTCACATCCATGGTGGATATGGAGCAGATATGATGGATG-------- 223
BSNT_05329___ 232 TCCACGCTCGACAT-------CATG-------TCG-TCAAGACTGCCCG- 265
|||||| |||| ||| |.|..|||..|||
BPUM_3138___n 224 --------CGACATCAGAAGCCATGAATACAATCGCTGATCACTTACCGT 265
BSNT_05329___ 266 AAGAAGGCACGACGAGCTTTTTAGCCACAACGATTACCCAAGAGCATGGG 315
.||||||.|||||.||.||||||||||||||.||.||.|||.|.||
BPUM_3138___n 266 CAGAAGGAACGACAAGTTTTTTAGCCACAACCATCACTCAAAACCA---- 311
BSNT_05329___ 316 AACATTTCTCAAGCTTTGGTGAACGC-----AAGA-------GAGTGGAA 353
|||||...|.|.|.|.|| ||.| .|||||||
BPUM_3138___n 312 --------TCAAGAGATAGAGCAAGCACTTAAAAATGTCGCCCAGTGGAA 353
BSNT_05329___ 354 AGCGGC-------TGAAG-------AGTCCTCTTTATTAGGTGCAGAACT 389
| | ||||| ||.|.| |.|| |||.|| |
BPUM_3138___n 354 A----CCATACAATGAAGAACAAGCAGGCGT-----TCAG--GCACAA-T 391
BSNT_05329___ 390 G-CTCGGCATTCATTTAGAGGGCCCCTTTGTTTCGCCTAAAAG----AGC 434
| .|.||.||.|||.|.||.||.||.|||.||||| |||| |||
BPUM_3138___n 392 GTTTAGGTATCCATCTTGAAGGTCCTTTTATTTCG----AAAGATAAAGC 437
BSNT_05329___ 435 CGGAGCGCAGC-----CAAAGGAGTGGATTAGGCCTTCGGATGTTGCGCT 479
.||.||.|||| ||| |||||.|.||...|..||.|..|.||
BPUM_3138___n 438 AGGGGCACAGCCTGTTCAA-----TGGATAAAGCAGCCCAATCTCCCTCT 482
BSNT_05329___ 480 TTTCAAAAAGTGGCAGCAGGAGGCGGGCGGACTGATCA--------AAAT 521
|||.|||||.|| ||.|||.|| ..||||.|| .|||
BPUM_3138___n 483 TTTTAAAAAATG---GCTGGATGC-----TTCTGAACACCTTATTCGAAT 524
BSNT_05329___ 522 TGTTACACTTGCGCCGGAGGAGGATCAGCATTTTGAACTGATCCGCCAT- 570
|||.||..||||.||.||.||.||.|...|.|||| ||..||...|||
BPUM_3138___n 525 TGTCACGTTTGCACCTGAAGAAGACCCTGACTTTG--CTTTTCTTTCATT 572
BSNT_05329___ 571 -TTGAAAGACGAATCGATTATCGCGTCCATGGGGCACACGGATGCCGATT 619
|||.||||..||...|||||..|.||.||.||.||.|||.|||||.||
BPUM_3138___n 573 GTTGCAAGAAAAAAACATTATTCCTTCTATTGGACATACGAATGCCCAT- 621
BSNT_05329___ 620 CCGCATTGC-TG-TCGGAT--GCCGCAAAAGCA-GGGGCGAGCCATATGA 664
|||..| || |.|.|| ||.|| |||||| ||.||..|||||.|.|
BPUM_3138___n 622 ---CATGACATGATTGAATTAGCAGC-AAAGCATGGTGCTCGCCATGTCA 667
BSNT_05329___ 665 CTCATCTGTACAACGCGATGAGCCCGTTTCATCACCGAGAGCC---CGGA 711
|.|||||.||.||.||..||||..|||||||.||.||.||.|| ||..
BPUM_3138___n 668 CGCATCTTTATAATGCACTGAGTTCGTTTCAGCATCGTGAACCAAACGCT 717
BSNT_05329___ 712 GTGATCGGAACGGCGCTGGCCCATGATGGGTTTGTGA-----CA----GA 752
| |.|||.|.||.||..|..|.|| || || ||
BPUM_3138___n 718 G---TAGGAGCTGCCCTTACGAACGA---------GAATCTTCATATTGA 755
BSNT_05329___ 753 GCTTATTGCCGATGGCATTCACTCCCATCCTTTAGCTGCA--AAGCTTGC 800
|||.|||.|.|||||.||.|||||.|||||..|.|| || ||||||||
BPUM_3138___n 756 GCTGATTACGGATGGGATACACTCTCATCCACTTGC--CATCAAGCTTGC 803
BSNT_05329___ 801 TTTTTTGGCGAAAGGCAGCAGCAAGCTCATTT-----TAATTACCGATTC 845
.|.||||||.|||||.|| .|.||.||| |.||||||||.||
BPUM_3138___n 804 GTATTTGGCAAAAGGAAG-----TGATCGTTTAATGATGATTACCGACTC 848
BSNT_05329___ 846 CATGAGGGCAAAAGGCCT---GAAAG--ACGGCGTATATGAGTTTGGCGG 890
.|||.|.||||||||.|| |||.| ||| |||||||||||.||
BPUM_3138___n 849 GATGCGCGCAAAAGGACTCGGGAATGGCACG-----TATGAGTTTGGGGG 893
BSNT_05329___ 891 CCAAAGTGTGACGGTAAGAGGACGAACAGCACTTCTTTCAGACGGAACCC 940
|||||..||.||.||.||.| |.|.|||..|.||..|||||||.||.|
BPUM_3138___n 894 CCAAACAGTCACAGTCAGTG---GCAAAGCTTTACTGGCAGACGGTACAC 940
BSNT_05329___ 941 TTGCCGGTTCGATCCTCAAAATGAACGAAGGCG---CACGGCATATGCGT 987
|.||.||.|||||.||....|||||.||.|||| .|||| |||...
BPUM_3138___n 941 TAGCAGGATCGATTCTGCGCATGAAAGATGGCGTCAAACGG---ATGAAA 987
BSNT_05329___ 988 GAGTTTACAAATTGCTCTTGGACGGATATAGCTAATATAACTTCTGCAAA 1037
.||.|.|||.|||||...|||||.||.|||||.||.||.||.||..|.||
BPUM_3138___n 988 CAGATCACACATTGCGAGTGGACAGAGATAGCAAAGATGACCTCAACTAA 1037
BSNT_05329___ 1038 CGCGGCCAAACAGCTGG----------GCATCTTTGACCGAAAAGGCAGT 1077
.||.||||..|||||.| |||.|||.|..|||
BPUM_3138___n 1038 TGCAGCCATTCAGCTAGGACTGGATCAGCAGCTTGGTTCGA--------- 1078
BSNT_05329___ 1078 GTGACTGTGGGAAAAGATGCAG--------ATTTGG--TGATTGTCAGCA 1117
.||| .||.||||||.|.|||| |||||| ||| |||
BPUM_3138___n 1079 TTGA-AGTTGGAAAACAAGCAGACCTTGTCATTTGGGATGA--GTC---- 1121
BSNT_05329___ 1118 GTGATTGCGAGGTGATTCTCACCATTTGCCGCGGAAACATTGCATTT--- 1164
|.||||..|.||..|.||.||.||||..|||.|.||.|..|||
BPUM_3138___n 1122 ----TGGCGAACTAATGATGACGATCTGCCATGGACAAATCGTCTTTGAG 1167
BSNT_05329___ 1165 -ATATCCAAGGAGGCTGACCAGATATGA---- 1191
|| ||||||| ||| ||.|
BPUM_3138___n 1168 AAT----AAGGAGG----CCA---ATCACTAA 1188
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