Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05589 and BPUM_3131
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05589___ywnB.1.24716.seq
# -bsequence dna-align/BPUM_3131.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05589___ywnB-BPUM_3131.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-BPUM_3131.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: BPUM_3131
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 674
# Identity: 462/674 (68.5%)
# Similarity: 462/674 (68.5%)
# Gaps: 64/674 ( 9.5%)
# Score: 1439.0
#
#
#=======================================
BSNT_05589___ 1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAGATTTT 50
|||||||||||||||||.|||||.|..||.|||||.|||.|.||.|||.|
BPUM_3131 1 ATGAAAATTGGTATTATTGGCGCTACAGGTAAAGCAGGACAGGAAATTGT 50
BSNT_05589___ 51 GAAAGAAGCGAAAACAAGAGACCATGAAGTGACAGCCATCGTCAGAAACG 100
.|||||..|..||.||||||..||||||||.|||||.|||||..||.|.|
BPUM_3131 51 AAAAGAGACTCAATCAAGAGGACATGAAGTAACAGCTATCGTTCGAGATG 100
BSNT_05589___ 101 CTTCAAAAGTG-CAGGAGCAGGACGTAGCGGTTTTGGAGAAAGATGTGTT 149
|...||||||| |||...|| ..|||.||.|||.|.|||||.||||||||
BPUM_3131 101 CGAAAAAAGTGACAGATTCA-TCCGTTGCTGTTATCGAGAAGGATGTGTT 149
BSNT_05589___ 150 TGAACTGAC-TGTGGAAGACA-TCAAGCCTTTCGACGCGGTCGTAAACGC 197
| .|.|.|| .|..||||||| |.|||.|||| ||.|...||||.||.||
BPUM_3131 150 T-CATTTACAAGCAGAAGACATTAAAGGCTTT-GATGTCATCGTCAATGC 197
BSNT_05589___ 198 TTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCAGG--AAG 245
.|||||.|||.|..|.||..||||.||.||.||.||.|||||.|| ||.
BPUM_3131 198 ATTTGGCGCACCTGCTGGGAAAGAGCAACTGCACGTAGAAGCTGGGAAAA 247
BSNT_05589___ 246 AGCACTCA-TCAGCATTTTAAAGGACG----CGAAGCACACAAGATTGCT 290
|| ||.| |.|| |||||.||.|||| || |.||..|.||..|
BPUM_3131 248 AG--CTGATTGAG-ATTTTGAAAGACGTACCCG----ATACGCGTTTAAT 290
BSNT_05589___ 291 TGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGC-CAAA--ACA- 336
.|||||.|||||||||||.||.||.||||||||.||||| ||.| |||
BPUM_3131 291 CGTTGTGGGCGGAGCGGGGAGTCTATTTGTTGACGAAGCTCAGACTACAA 340
BSNT_05589___ 337 -ACCCGTTTAATGGATACGCCGGAATTTCCGAAAGAATATTTGCCAACTG 385
||..||| |||||.||.||||||||.||.||.|||.|..||||||
BPUM_3131 341 GACTTGTT-----GATACACCAGAATTTCCAAAGGAGTATATCGCAACTG 385
BSNT_05589___ 386 CATCAAATCAAGGCGAGAACCTGAAAGATTTGCAGCAGACAGACTCCA-- 433
|.|||.|.|||||.||.|||||.||||||.|.|| |||.|||..|
BPUM_3131 386 CTTCACAGCAAGGTGAAAACCTAAAAGATCTTCA----ACAAACTGAAGG 431
BSNT_05589___ 434 --TTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAGCAGGAA 481
|....||||||||||||||.|||||.|||||.||||||||||||||.|
BPUM_3131 432 ATTAAAATGGACGTTCCTCAGCCCTGCCGCATTCTTTGATCCAGCAGGCA 481
BSNT_05589___ 482 AACGGACTGGCTCTTACCAAAAAGGAAAAGA-CAA-TGTCATCGTAAATG 529
||||.||.||.|||||....||||||||||| ||| || ||.||.|||.
BPUM_3131 482 AACGCACAGGTTCTTATGTGAAAGGAAAAGATCAACTG--ATTGTTAATT 529
BSNT_05589___ 530 CAAAAGGCGGCAGCTATATCAGCTATGCAGATTATGCCATTGC-CGTGTT 578
|.|||||.|.|||||||.|.||.|||||.||.||.|||||||| |.|| |
BPUM_3131 530 CTAAAGGTGACAGCTATGTGAGTTATGCCGACTACGCCATTGCGCTTG-T 578
BSNT_05589___ 579 GGACGAGCTTGAACA----TCCCGAACACAAAAAT------GAACGCTTC 618
.||.||..||||.|| .||| || |||||.||.
BPUM_3131 579 CGATGAAATTGAGCAGGCTGCCC----------ATGTTAGAGAACGTTTT 618
BSNT_05589___ 619 ACAGTGGTAAGCGAAGCGGAATAA 642
||.||.|||...||..|.||||||
BPUM_3131 619 ACCGTTGTATCTGATACAGAATAA 642
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