Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05589 and BPUM_3131

See Amino acid alignment / Visit BSNT_05589 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_05589___ywnB.1.24716.seq
#    -bsequence dna-align/BPUM_3131.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05589___ywnB-BPUM_3131.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-BPUM_3131.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: BPUM_3131
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 674
# Identity:     462/674 (68.5%)
# Similarity:   462/674 (68.5%)
# Gaps:          64/674 ( 9.5%)
# Score: 1439.0
# 
#
#=======================================

BSNT_05589___      1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAGATTTT     50
                     |||||||||||||||||.|||||.|..||.|||||.|||.|.||.|||.|
BPUM_3131          1 ATGAAAATTGGTATTATTGGCGCTACAGGTAAAGCAGGACAGGAAATTGT     50

BSNT_05589___     51 GAAAGAAGCGAAAACAAGAGACCATGAAGTGACAGCCATCGTCAGAAACG    100
                     .|||||..|..||.||||||..||||||||.|||||.|||||..||.|.|
BPUM_3131         51 AAAAGAGACTCAATCAAGAGGACATGAAGTAACAGCTATCGTTCGAGATG    100

BSNT_05589___    101 CTTCAAAAGTG-CAGGAGCAGGACGTAGCGGTTTTGGAGAAAGATGTGTT    149
                     |...||||||| |||...|| ..|||.||.|||.|.|||||.||||||||
BPUM_3131        101 CGAAAAAAGTGACAGATTCA-TCCGTTGCTGTTATCGAGAAGGATGTGTT    149

BSNT_05589___    150 TGAACTGAC-TGTGGAAGACA-TCAAGCCTTTCGACGCGGTCGTAAACGC    197
                     | .|.|.|| .|..||||||| |.|||.|||| ||.|...||||.||.||
BPUM_3131        150 T-CATTTACAAGCAGAAGACATTAAAGGCTTT-GATGTCATCGTCAATGC    197

BSNT_05589___    198 TTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCAGG--AAG    245
                     .|||||.|||.|..|.||..||||.||.||.||.||.|||||.||  ||.
BPUM_3131        198 ATTTGGCGCACCTGCTGGGAAAGAGCAACTGCACGTAGAAGCTGGGAAAA    247

BSNT_05589___    246 AGCACTCA-TCAGCATTTTAAAGGACG----CGAAGCACACAAGATTGCT    290
                     ||  ||.| |.|| |||||.||.||||    ||    |.||..|.||..|
BPUM_3131        248 AG--CTGATTGAG-ATTTTGAAAGACGTACCCG----ATACGCGTTTAAT    290

BSNT_05589___    291 TGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGC-CAAA--ACA-    336
                     .|||||.|||||||||||.||.||.||||||||.||||| ||.|  ||| 
BPUM_3131        291 CGTTGTGGGCGGAGCGGGGAGTCTATTTGTTGACGAAGCTCAGACTACAA    340

BSNT_05589___    337 -ACCCGTTTAATGGATACGCCGGAATTTCCGAAAGAATATTTGCCAACTG    385
                      ||..|||     |||||.||.||||||||.||.||.|||.|..||||||
BPUM_3131        341 GACTTGTT-----GATACACCAGAATTTCCAAAGGAGTATATCGCAACTG    385

BSNT_05589___    386 CATCAAATCAAGGCGAGAACCTGAAAGATTTGCAGCAGACAGACTCCA--    433
                     |.|||.|.|||||.||.|||||.||||||.|.||    |||.|||..|  
BPUM_3131        386 CTTCACAGCAAGGTGAAAACCTAAAAGATCTTCA----ACAAACTGAAGG    431

BSNT_05589___    434 --TTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAGCAGGAA    481
                       |....||||||||||||||.|||||.|||||.||||||||||||||.|
BPUM_3131        432 ATTAAAATGGACGTTCCTCAGCCCTGCCGCATTCTTTGATCCAGCAGGCA    481

BSNT_05589___    482 AACGGACTGGCTCTTACCAAAAAGGAAAAGA-CAA-TGTCATCGTAAATG    529
                     ||||.||.||.|||||....||||||||||| ||| ||  ||.||.|||.
BPUM_3131        482 AACGCACAGGTTCTTATGTGAAAGGAAAAGATCAACTG--ATTGTTAATT    529

BSNT_05589___    530 CAAAAGGCGGCAGCTATATCAGCTATGCAGATTATGCCATTGC-CGTGTT    578
                     |.|||||.|.|||||||.|.||.|||||.||.||.|||||||| |.|| |
BPUM_3131        530 CTAAAGGTGACAGCTATGTGAGTTATGCCGACTACGCCATTGCGCTTG-T    578

BSNT_05589___    579 GGACGAGCTTGAACA----TCCCGAACACAAAAAT------GAACGCTTC    618
                     .||.||..||||.||    .|||          ||      |||||.||.
BPUM_3131        579 CGATGAAATTGAGCAGGCTGCCC----------ATGTTAGAGAACGTTTT    618

BSNT_05589___    619 ACAGTGGTAAGCGAAGCGGAATAA    642
                     ||.||.|||...||..|.||||||
BPUM_3131        619 ACCGTTGTATCTGATACAGAATAA    642


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