Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05314 and BPUM_3128
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05314___hisZ.1.24716.seq
# -bsequence dna-align/BPUM_3128___hisZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05314___hisZ-BPUM_3128___hisZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05314___hisZ-BPUM_3128___hisZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05314___hisZ
# 2: BPUM_3128___hisZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1196
# Identity: 864/1196 (72.2%)
# Similarity: 864/1196 (72.2%)
# Gaps: 40/1196 ( 3.3%)
# Score: 2866.0
#
#
#=======================================
BSNT_05314___ 1 ATGTTTATGTTTGAAAAACCGCACGGCATGAGAGATACACTGCCCGGTTT 50
||||||||||||||.||||||.|.||.|||.|.|||.||.|.||.||.||
BPUM_3128___h 1 ATGTTTATGTTTGAGAAACCGTATGGTATGCGGGATTCATTACCAGGATT 50
BSNT_05314___ 51 ATACGAAACGAAAAAAAAGGTGAGACGATCGTTAACCGATTTGATTGATA 100
.||.||.|||||.|||||.|||||||..||.|||||.||..|.||..||.
BPUM_3128___h 51 GTATGAGACGAAGAAAAAAGTGAGACATTCTTTAACAGAGGTCATGAATG 100
BSNT_05314___ 101 AATGGGGATATCAATTTATGGAAACGCCGACACTGGAGTTTTACGATACC 150
..|||||.||.|..||.|||||.||.||.||.||.||.|||||||||||.
BPUM_3128___h 101 GTTGGGGTTACCGGTTGATGGAGACACCAACGCTTGAATTTTACGATACA 150
BSNT_05314___ 151 GTTGGCGTCCAGTCAGCAATTGAAGA-GCAGCAGCTGTTTAAGCTACTTG 199
||.||.||.||.||.||.|||..||| .|| |||||.||||||||..|.|
BPUM_3128___h 151 GTCGGTGTTCAATCGGCGATTACAGATACA-CAGCTCTTTAAGCTTTTAG 199
BSNT_05314___ 200 ATCAGGAC-GGCAAGACATTGGTGCTTCGCCCGGATATGACGGGGCCGAT 248
|||||.|| ||||| ||..|.||.|||.|.||.|||||||||||.||.||
BPUM_3128___h 200 ATCAGAACGGGCAA-ACCCTAGTACTTAGACCTGATATGACGGGACCTAT 248
BSNT_05314___ 249 TGCAAGGGTAGCGGCATCGAAGCTTC-TGAAACACG-GTCATCCGCTAAG 296
|||.||.|||||||||||.|||||.| || ||||.| || ||||.||..|
BPUM_3128___h 249 TGCGAGAGTAGCGGCATCAAAGCTCCATG-AACAGGCGT-ATCCACTTCG 296
BSNT_05314___ 297 AGTCGGCTATGCGGCAAATGTATTCAGGGCTCAGGAGCGTGAAGGCGGAC 346
.||.||.||||||||.|||||.|||.||||.|||||..|.|||||||||.
BPUM_3128___h 297 CGTTGGGTATGCGGCCAATGTGTTCCGGGCGCAGGAAAGAGAAGGCGGAA 346
BSNT_05314___ 347 GTCCGGCTGAGTTCGAGCAGGTCGGAGTGGAGTTAATCGGTGACGGCACG 396
|.||..|.||.||.||||||||||||.|.|||||.||.||.|||||..||
BPUM_3128___h 347 GACCATCAGAATTTGAGCAGGTCGGAATTGAGTTGATTGGAGACGGTTCG 396
BSNT_05314___ 397 ACGAGCGCGGATGCGGAGGTCATTGCTTTAGTCGTCGGGGCATTAAAAAA 446
|..||.||.|||||.||.||.||.||..|.|||||....|||||||||||
BPUM_3128___h 397 ATTAGTGCAGATGCTGAAGTGATCGCGCTTGTCGTATTCGCATTAAAAAA 446
BSNT_05314___ 447 CGCTGGGCTGGCA--TCCTTTAAAATTGCCATCGGCCATGCCGGCATT-G 493
.|||||||| || |||||.|||||.||.||.||.||||.| ||.|| |
BPUM_3128___h 447 TGCTGGGCT--CAATTCCTTCAAAATCGCAATTGGGCATGTC-GCTTTAG 493
BSNT_05314___ 494 CGGATGCTTTGTTTGTTGAGGTGCTCGGAAACGTTGAACGAGCTGATGTG 543
|.||..|.||.|||||.||.|||||.|||||....||.||.||..|.||.
BPUM_3128___h 494 CAGAGACGTTATTTGTAGATGTGCTGGGAAATACAGAGCGTGCAAACGTC 543
BSNT_05314___ 544 CTGCGGAGGTTCTTATATGAAAAGAACTACGTCGGCTACAGAGAGCATGT 593
||.||..|.|||||||||||||||||.||.||.||.|||.|..|||||||
BPUM_3128___h 544 CTTCGCCGATTCTTATATGAAAAGAATTATGTAGGATACCGTCAGCATGT 593
BSNT_05314___ 594 CAAGTCTCTCCCGCTTTCCTCCATTGATAAAAGCAGGCTGCTTGAGCTCC 643
.|||....|.||.||.||||||||.|||||||..||||||.|..||||..
BPUM_3128___h 594 GAAGCAATTGCCACTCTCCTCCATCGATAAAACGAGGCTGTTACAGCTTT 643
BSNT_05314___ 644 T----TGAACTGCGGGGCGGTATAGAAGT-ATGCGGA-CGTGCCGAAGAA 687
| |.||..|..||.||| ||||| | |||| ||.||.||.|||
BPUM_3128___h 644 TAGAGTTAAGAGGAGGCCGG----GAAGTCA--CGGAGCGGGCAGAGGAA 687
BSNT_05314___ 688 ATCGTCGATTCTGCGCAAGGAAAA-AGCGTGGTTGATGAGCTGAAGGCGC 736
|||||||.|||.....|||||||| || |||.|.|...||.|.|||.|||
BPUM_3128___h 688 ATCGTCGTTTCACAAGAAGGAAAAGAG-GTGCTCGCGCAGTTAAAGTCGC 736
BSNT_05314___ 737 TGTGGGACATTCTTGAGGATTACGGATGTACGGAAAATGTCCGCCTGGAT 786
|.|||||.|..|||||.||||||||.|||||||||.||.||||.||.|||
BPUM_3128___h 737 TTTGGGAGACACTTGAAGATTACGGCTGTACGGAATATATCCGTCTCGAT 786
BSNT_05314___ 787 CTGAATATGGTCAGCCACATGAGCTATTACACAGGGATTTTATTTGAAGT 836
.|.|..|||||.||.||.||||||||.|||||.||.|||||.||||||||
BPUM_3128___h 787 TTAAGCATGGTGAGTCATATGAGCTACTACACGGGTATTTTGTTTGAAGT 836
BSNT_05314___ 837 GTACGCCGAGAATGTCGGTTTTGTCATTGGAAGCGGCGGCCGTTACAACA 886
.|..||.||..||||.||.|..|||||.|||||.|||||..|.||..||.
BPUM_3128___h 837 ATTTGCTGATCATGTTGGGTCAGTCATCGGAAGTGGCGGTAGATATGACC 886
BSNT_05314___ 887 AGCTGCTGGGCCATTTTGATTCACCTGCACCGGCAACAGGCTTCGGGCTT 936
|..||||.|..||.|||.||.||||||||||.||.|||||.|||||.|||
BPUM_3128___h 887 AATTGCTTGCTCACTTTAATGCACCTGCACCAGCTACAGGATTCGGACTT 936
BSNT_05314___ 937 CGGATCGACCGGCTGATTGAAGCCCTTCATATGAAAGAAGAACCATGTGA 986
||..|.|||||.|||.|||||||.||..||.|.|||||| |.|.|||.|.
BPUM_3128___h 937 CGATTAGACCGTCTGCTTGAAGCGCTCGATGTAAAAGAA-ATCAATGAGC 985
BSNT_05314___ 987 TATA-GACGCTGTTATTTTCAGCAAAGAGCAGCGGGCGCAAGCTATCGCT 1035
.|.| ||.||.||.|||||.||.|||||.||..||..|.|.|||.|.|||
BPUM_3128___h 986 CACAGGAGGCAGTGATTTTTAGTAAAGAACAAAGGCTGGAGGCTTTTGCT 1035
BSNT_05314___ 1036 TATGC-GAATGAA-GAACG--CATGAAAGGGAACAAAG-TAGTTCTTCAA 1080
|.||| ||| || ||.|| || |||||||| |||| |.||.||.|||
BPUM_3128___h 1036 TTTGCAGAA--AAGGAGCGGTCA--AAAGGGAA-AAAGATCGTGCTGCAA 1080
BSNT_05314___ 1081 GATTTATCGGGAATAGAAAATATCGACCAGATGACAAAATCTTTTGCAAA 1130
||.|||.|.||.||.||||||||.|||..||||||.||..|.||||...|
BPUM_3128___h 1081 GACTTAGCAGGGATTGAAAATATTGACGCGATGACCAAGGCATTTGAGCA 1130
BSNT_05314___ 1131 CGTCACTTATTTTATCGGTGCCAGAAAGGAAGAGCAAAATGGGTAA 1176
.||.||||||||||||||.||.|||||||.||||||||||||||||
BPUM_3128___h 1131 GGTGACTTATTTTATCGGCGCTAGAAAGGGAGAGCAAAATGGGTAA 1176
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