Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05309 and BPUM_3125

See Amino acid alignment / Visit BSNT_05309 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05309___hisB.1.24716.seq
#    -bsequence dna-align/BPUM_3125___hisB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05309___hisB-BPUM_3125___hisB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05309___hisB-BPUM_3125___hisB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05309___hisB
# 2: BPUM_3125___hisB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     447/595 (75.1%)
# Similarity:   447/595 (75.1%)
# Gaps:          20/595 ( 3.4%)
# Score: 1637.0
# 
#
#=======================================

BSNT_05309___      1 ATGAGAAAAGCGGAA--CGCGTCAGGAAAACAAACGAAACAGATATTGAG     48
                     ||||||.|.||||||  .|||  ||.||||||||.|||||..|||||   
BPUM_3125___h      1 ATGAGACAGGCGGAAACAGCG--AGAAAAACAAATGAAACGAATATT---     45

BSNT_05309___     49 CTGGCATTTACA------ATAGACGGCGGGGGACAAGCGGATATCAAAAC     92
                        .||||.|||      ||.||.||.|..|||.||||||||||..||||
BPUM_3125___h     46 ---TCATTAACATTAGAGATTGATGGAGAAGGAAAAGCGGATATTCAAAC     92

BSNT_05309___     93 AGATGTGCCGTTTATGACACATATGTTGGATTTATTCACGAAACACGGCC    142
                     ||||||.||.|||||||||||.|||.|.|||.||||||||||.||.||.|
BPUM_3125___h     93 AGATGTCCCTTTTATGACACACATGCTCGATCTATTCACGAAGCATGGAC    142

BSNT_05309___    143 AATTCGATCTTTCCATTAACGCAAAAGGCGATGTTGATATAGATGATCAC    192
                     |.||..||.|..||.|..|.||.|||||.|||...|||.|.|||||||||
BPUM_3125___h    143 ACTTTAATTTGACCGTCGATGCGAAAGGAGATACGGATGTTGATGATCAC    192

BSNT_05309___    193 CACACGACTGAAGATATCGGCATC-TGCTTAGGGCAGGCGCTGCTCGAAG    241
                     |||||.||.||||||||.|||||| |.||| |||||...|.|....||||
BPUM_3125___h    193 CACACAACAGAAGATATTGGCATCGTTCTT-GGGCAAATGTTTAAGGAAG    241

BSNT_05309___    242 CGTTGGGCGATAAAAAAGGAATCAAACGCTACGGATCGGCGTTTGTGCCG    291
                     ||||.||.|||||||||||||||||.||.||.||.|||...|||||.||.
BPUM_3125___h    242 CGTTAGGTGATAAAAAAGGAATCAAGCGATATGGTTCGAGTTTTGTTCCA    291

BSNT_05309___    292 ATGGATGAGGCACTTGCTCAAGTTGTGATTGATTTAAGCAACCGGCCGCA    341
                     ||||||||..|.||||||||.||.|||.|||||||||||||.||.||.||
BPUM_3125___h    292 ATGGATGAAACGCTTGCTCAGGTCGTGGTTGATTTAAGCAATCGTCCTCA    341

BSNT_05309___    342 CTTAGAAATGCGCGTTGATTTCCCGGCTGCTAAA-GTCGGAACTTTCGAT    390
                     .||.||||||.|.|..|..|||||...| |.||| |||||.||.||.|||
BPUM_3125___h    342 TTTGGAAATGAGAGCGGCCTTCCCAAGT-CAAAAGGTCGGTACATTTGAT    390

BSNT_05309___    391 ACGGAGCTTGTACATGAATTTTTGTGGAAGCTTGCGCTCGAAGCCCGGAT    440
                     ||.|||||.||.|||||||||.|.||||||.|||||.|.||||||||.||
BPUM_3125___h    391 ACAGAGCTCGTGCATGAATTTCTTTGGAAGTTTGCGTTAGAAGCCCGTAT    440

BSNT_05309___    441 GAACCTGCACGTCATCGTTCATTATGGCACAAATACCCACCACATGATTG    490
                     .||.||.||.|||||.|||||.|||||.||.|||||.|||||.|||||||
BPUM_3125___h    441 AAATCTTCATGTCATTGTTCACTATGGAACCAATACGCACCATATGATTG    490

BSNT_05309___    491 AAGCCGTTTTTAAAGCGCTGGGACGTGCGCTTGATGAAGCGACAACGATC    540
                     ||||..|||||||||||.|||.||||||..|.||||||||.|||||.||.
BPUM_3125___h    491 AAGCGATTTTTAAAGCGATGGCACGTGCTTTGGATGAAGCAACAACCATT    540

BSNT_05309___    541 GATCCGCGAGTTAAAGGAATACCGTCAACGAAAGGGATGCTGTAA    585
                     |||||.||.||.|||||.||.||.|||||.||.||||||||.|||
BPUM_3125___h    541 GATCCACGTGTGAAAGGGATTCCTTCAACAAAGGGGATGCTCTAA    585


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