Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05307 and BPUM_3123

See Amino acid alignment / Visit BSNT_05307 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05307___hisA.1.24716.seq
#    -bsequence dna-align/BPUM_3123___hisA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05307___hisA-BPUM_3123___hisA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05307___hisA-BPUM_3123___hisA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05307___hisA
# 2: BPUM_3123___hisA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 767
# Identity:     532/767 (69.4%)
# Similarity:   532/767 (69.4%)
# Gaps:          58/767 ( 7.6%)
# Score: 1723.5
# 
#
#=======================================

BSNT_05307___      1 ATGAGTGCTTTTACATTATATCCGGCAATTGATATGAGAAACGGCAAATG     50
                     |||||||..||||||||.|||||.||.|||||||||||.||.||||||||
BPUM_3123___h      1 ATGAGTGAATTTACATTGTATCCAGCGATTGATATGAGGAATGGCAAATG     50

BSNT_05307___     51 TGTCCGCCTTGTTCAAGGGGATTATAATAAGGAAACGATATATGGCGATT    100
                     |||.||.||.||.|||||.||||||.||.|.|||||.||.|||||.||||
BPUM_3123___h     51 TGTACGGCTCGTGCAAGGAGATTATGATCAAGAAACCATTTATGGAGATT    100

BSNT_05307___    101 CACCGTACGACATGGCTGA-GTTATTTGCGAAAGAGGGTGCCGAATGGAT    149
                     |||||..|||.||||| || |..||||||.||.||.||.||..|.|||||
BPUM_3123___h    101 CACCGCTCGATATGGC-GACGCGATTTGCAAATGAAGGAGCAAAGTGGAT    149

BSNT_05307___    150 CCATCTCGTTGATCTCGACGGGGCCAAAGAAGGGAAAAGGGTAAATGACC    199
                     .|||||||||||.||.||.||.||.||.|..|||||..|.||.|||.|..
BPUM_3123___h    150 TCATCTCGTTGACCTAGATGGTGCGAAGGCGGGGAATCGCGTCAATCATG    199

BSNT_05307___    200 GCCATGTGATTGAGATTGCGCAAAAGCTGAACC-------TGAAAGTCGA    242
                     ..||||||.|.|..|||||       .|.|.||       |.|||||..|
BPUM_3123___h    200 AGCATGTGCTGGCAATTGC-------TTCATCCTTAGATGTAAAAGTACA    242

BSNT_05307___    243 AATCGGCGGCGGAATCCGTTCCGAAAAAGACGTCTATGAATATT-TATCA    291
                     |||.||.|||||.||.||..|.|||.|||||||   ||..|.|| |||.|
BPUM_3123___h    243 AATTGGTGGCGGCATTCGGACAGAAGAAGACGT---TGCCTTTTATATAA    289

BSNT_05307___    292 GCA--GGAGTCGATCGGGTGATCCTGGGAAGCTCAGCAGTTTCTAACCCT    339
                     .||  ||.||.|.||||||.|||||.||.|||||.||.||||||||..||
BPUM_3123___h    290 ACAATGGCGTAGCTCGGGTCATCCTTGGCAGCTCGGCTGTTTCTAATTCT    339

BSNT_05307___    340 CCGTTTGTCAAAAAAATGCTGAAACAATATGGCGAGAAAATTGCAATCGG    389
                     .|.|||||.|||||||||||....||||||||.||||||||.||.||.||
BPUM_3123___h    340 GCTTTTGTGAAAAAAATGCTTGCGCAATATGGGGAGAAAATAGCGATTGG    389

BSNT_05307___    390 ACTGGATGCGAGAAACGGTTTTGTTTCAACAGAGGGATGGCTGGAAACAT    439
                     ..|.|||||||||||.||.||.||.||.||.|||||.|||||.|||||.|
BPUM_3123___h    390 CATTGATGCGAGAAATGGATTCGTATCGACTGAGGGGTGGCTTGAAACGT    439

BSNT_05307___    440 CAACCCTTAAGGCAACTGAACTGGGCAAAGAGCTAGCCAATGAAGGTGCG    489
                     |.|...|.||||||...||.||.||||||||..|.||.||.|||||.||.
BPUM_3123___h    440 CGAAAGTGAAGGCAGAGGATCTCGGCAAAGAATTGGCAAAGGAAGGCGCA    489

BSNT_05307___    490 GAAGTCTTTATTTTTACTGACATCGCGACAGATGGA----ATGCTGTCAG    535
                     ||.|||||||||||.||.||.||    .||.|||||    ||||||.|.|
BPUM_3123___h    490 GAGGTCTTTATTTTCACAGATAT----TCAAATGGACGGCATGCTGGCGG    535

BSNT_05307___    536 GCCCAAATGTTAAAAGTAC-GGTCGAGCTT-GC-GAAG-GAAACGGGGAA    581
                     |.||.|||||..||||||| |.||  |||| || |||| |  ||.||.||
BPUM_3123___h    536 GTCCCAATGTGGAAAGTACAGTTC--GCTTAGCAGAAGCG--ACTGGCAA    581

BSNT_05307___    582 ATCGGTGATCGCTTCAGGCGGAGTCAGCTCCGTCACGGATC-TCGAAGCC    630
                     |...||.||.||||||||.||..||||.||.||..|.|||| ||.||   
BPUM_3123___h    582 ACAAGTCATTGCTTCAGGTGGTATCAGTTCGGTAGCTGATCTTCAAA---    628

BSNT_05307___    631 CTCGCTCGCTATGAG-------GCGGAC-GGCGTCTCTGGAGCGATCATC    672
                           .|||.|.||       ||.||| |||||.|||||.||||||||.
BPUM_3123___h    629 ------AGCTGTCAGCACAAAAGCAGACAGGCGTTTCTGGTGCGATCATT    672

BSNT_05307___    673 GGAAAAGCGCTGTATACCAATCAGTTTACGCTGAG-TGAGGCGCTTGAAA    721
                     |||||.||.||.|||||..|.|.|||||| .|.|| .||.||..|||||.
BPUM_3123___h    673 GGAAAGGCACTTTATACGGAGCGGTTTAC-TTTAGCAGAAGCAATTGAAG    721

BSNT_05307___    722 GGGTGAAGCGCAAATGA    738
                     ||.|..|.|||..||||
BPUM_3123___h    722 GGCTTGACCGCGTATGA    738


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05307 and BPUM_3123

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
