Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05305 and BPUM_3121
See
Amino acid alignment /
Visit
BSNT_05305 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05305___hisI.1.24716.seq
# -bsequence dna-align/BPUM_3121___hisI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05305___hisI-BPUM_3121___hisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05305___hisI-BPUM_3121___hisI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05305___hisI
# 2: BPUM_3121___hisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 656
# Identity: 458/656 (69.8%)
# Similarity: 458/656 (69.8%)
# Gaps: 52/656 ( 7.9%)
# Score: 1537.5
#
#
#=======================================
BSNT_05305___ 1 ATGAAACAGGCAGATGAACTGCGTTTTAACGAGGACGGATTAATTCCTGC 50
||||||||||||.|.|||.|....|||||.||||..||.||.||.|||||
BPUM_3121___h 1 ATGAAACAGGCAAACGAATTATCCTTTAATGAGGCAGGCTTGATACCTGC 50
BSNT_05305___ 51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTGCTGACACTTGCCTATATGA 100
.||.||.||||||||...|||.||.|||||..|||||.|.||.|||||||
BPUM_3121___h 51 GATTGTACAGGATGCTCAAAGTAAGGAAGTCTTGACATTGGCGTATATGA 100
BSNT_05305___ 101 A-CAAGGAATCATACGAAAAAACGCTGGAAACGAAGGAAACATGGTTTTA 149
| ||| |||||.||.||||||||..|.||.||...|||||||||||||||
BPUM_3121___h 101 ATCAA-GAATCCTATGAAAAAACAATAGAGACAGGGGAAACATGGTTTTA 149
BSNT_05305___ 150 CAGCCGCTCACGCCAAGCGTTATGGCATAAAGGAGAAACCTCAGGGAACA 199
||||||.|||.|..|.|.|.|.|||||.|||||.|..||.||.||..|.|
BPUM_3121___h 150 CAGCCGGTCAAGAAACGAGCTTTGGCACAAAGGCGCCACATCTGGACATA 199
BSNT_05305___ 200 CGCAAGCG-GTCAAAGGTATCCGGTATGACTGCGACGAGGACGCGTTGCT 248
|.| |||| ||||.|...||.||.||||||||.|||.||||.|||.||||
BPUM_3121___h 200 CTC-AGCGCGTCACATCCATTCGATATGACTGTGACAAGGATGCGCTGCT 248
BSNT_05305___ 249 CGTACTCGTAGAACC--GTCAGGCCCGGCATGCCACACTGGCAGCTACAG 296
.||.||.||...||| || ||.||.||.|||||||||||.||.||.||
BPUM_3121___h 249 TGTTCTTGTCACACCAAGT--GGACCAGCGTGCCACACTGGTAGTTATAG 296
BSNT_05305___ 297 CTGTTTTACGAAGGAA------------CAAACAGAAGAACAGGCCGCGG 334
|||.|||.||.|.||| |||||.|||||.|||
BPUM_3121___h 297 CTGCTTTTCGGAAGAAGGCGAGAAACGTCAAACGGAAGAGCAG------- 339
BSNT_05305___ 335 GCCGA------TTCGGCATCATGAACGAACTGGAGCGCGTAATCGCGGAA 378
|| |||| ||..|.||.|||||.||.|..||.||.|||.||
BPUM_3121___h 340 ---GATCGTTTTTCG--ATTTTAAATGAACTTGAACAGGTGATTGCGAAA 384
BSNT_05305___ 379 CGCCAAGCGGAGATGCCTGAAGGAGCTTACACCACTTACCTTTTCCGTG- 427
||.||.||.||.|||||.|||||.|||||.||.||.||.||.|| ||
BPUM_3121___h 385 CGTCAGGCTGAAATGCCAGAAGGCGCTTATACAACCTATCTATT---TGA 431
BSNT_05305___ 428 --AAGGCGTCGATAAGATTTTGAAAAAAGTCGGTGAAGAAGCATCCGAAG 475
||||.||||||||.||..|||||||.||.||.||||||||.||.||.|
BPUM_3121___h 432 AAAAGGGGTCGATAAAATCCTGAAAAAGGTAGGGGAAGAAGCGTCAGAGG 481
BSNT_05305___ 476 TCATCATCGCCGCGAAAAACCGGGACCACGAGGAACTCAAATGGGAAGCG 525
|||||||.||.||||||||||||||.||.||.|||.|.|||||||||.|.
BPUM_3121___h 482 TCATCATTGCTGCGAAAAACCGGGATCAAGAAGAATTGAAATGGGAAACA 531
BSNT_05305___ 526 GCAGACCTGCTGTATCACCTGCTTGTCCTGCTCAGAGAACAAGC-CTTGC 574
||.||.||.|||||||||||||||||..|..|..|.|||| ||| .||||
BPUM_3121___h 532 GCCGATCTTCTGTATCACCTGCTTGTGTTATTGCGTGAAC-AGCAATTGC 580
BSNT_05305___ 575 CGCTGGATGATGTGCTTGACGTATTGAAAAAACGCCATTCTGAGAAAGAA 624
|.||.||||||||..|..|.|||||.||||||||.||| .|||..
BPUM_3121___h 581 CTCTTGATGATGTTTTAAAAGTATTAAAAAAACGTCAT------CAAGGT 624
BSNT_05305___ 625 GAGTAA 630
||||.|
BPUM_3121___h 625 GAGTGA 630
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.