Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05292 and BPUM_3114
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05292___yvcK.1.24716.seq
# -bsequence dna-align/BPUM_3114.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05292___yvcK-BPUM_3114.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05292___yvcK-BPUM_3114.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05292___yvcK
# 2: BPUM_3114
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1027
# Identity: 711/1027 (69.2%)
# Similarity: 711/1027 (69.2%)
# Gaps: 98/1027 ( 9.5%)
# Score: 2427.5
#
#
#=======================================
BSNT_05292___ 1 ATGTTACTCACCGGGACATTGAAAAGAGAAGCCGGAAATAAGATG-GGAC 49
||| .|||
BPUM_3114 1 ------------------------------------------ATGACGAC 8
BSNT_05292___ 50 A-----AAAGCCGAAAATCG-CAATCTTTGGCGGCGGTACAGGTCTT-TC 92
| |||| .|.| ||.|| |||||||.||.||.|| ||| ||
BPUM_3114 9 ACTTCCAAAG------GTGGTCATTC-TTGGCGGGGGCACTGG-CTTATC 50
BSNT_05292___ 93 TGTATTGCTTCG-GGGCCTAAAGCATAAACCCGTTGACATCACGGCCATT 141
|||.|||||..| ||||..|||.|| ||.||.||.|||||.|||||.|||
BPUM_3114 51 TGTTTTGCTCAGAGGGCTAAAAACA-AAGCCAGTGGACATTACGGCTATT 99
BSNT_05292___ 142 GTAACAGTTGCCGATGATGGGGGAAGCTCTGGCCGTCTGCGGAATGAACT 191
|||||.|||||.|||||.||.||.|||||.|||.|.|||||..||||..|
BPUM_3114 100 GTAACGGTTGCTGATGACGGAGGCAGCTCAGGCAGACTGCGCCATGATTT 149
BSNT_05292___ 192 GAAAATTCCGCCTCCCGGAGACATCAGAAATGTGCTTGCCGCTTTATCCG 241
|||.|||||||||||.||.||.||..|||||||.|||||.|||.|.||.|
BPUM_3114 150 GAATATTCCGCCTCCAGGCGATATTCGAAATGTCCTTGCAGCTCTCTCTG 199
BSNT_05292___ 242 ATGTGGAGCCGCTTGTTGAAGATCTT-TTTCAGCACCGCTTCAATAAAGG 290
||||.||.||||||||.||||| ||| |||||||||||.||.||.|||||
BPUM_3114 200 ATGTTGAACCGCTTGTAGAAGA-CTTATTTCAGCACCGTTTTAACAAAGG 248
BSNT_05292___ 291 GAATGACTTAACAGGCCATTCTCTCGGGAATTTGATTTTGGCAGCGATGA 340
|||||||||||||||.||.|||||.||.||..|.|||.|.||.||.||||
BPUM_3114 249 GAATGACTTAACAGGTCACTCTCTTGGCAACCTCATTCTTGCGGCCATGA 298
BSNT_05292___ 341 CAAATATAACCGGTGATTTTTTTCACGCTGTCACAGAAATGAGCAAGGTG 390
|||||||||||||||||||||||||.||.||||||||||||||||||||.
BPUM_3114 299 CAAATATAACCGGTGATTTTTTTCATGCCGTCACAGAAATGAGCAAGGTC 348
BSNT_05292___ 391 CTGAATGTCAGAGGAAAGGTTTTGCCGGCTGCCAATGCCAGTGTCGTTTT 440
.|.|||||.||||||||.||.|||||.||.||.|||.|.|||||.|||.|
BPUM_3114 349 TTAAATGTGAGAGGAAAAGTCTTGCCAGCAGCGAATTCAAGTGTTGTTCT 398
BSNT_05292___ 441 GCATGCTGAGATGGAAGATGGCCGCGTGGTCTCAGGCGAGTCAACGATCC 490
.||.|||||..|.|||.||||.|..|||||..||||.||.||||..||||
BPUM_3114 399 ACACGCTGAATTAGAAAATGGGCAAGTGGTAACAGGAGAATCAAAAATCC 448
BSNT_05292___ 491 CGGAA--TACGGACAGCGCATTAAGCGTGTTTTTCTCACGCCTGA-ACAG 537
| || |||||..||||.|||||.||.||.||.|||||.||||| || |
BPUM_3114 449 C--AACCTACGGTGAGCGAATTAAACGAGTGTTCCTCACACCTGATAC-G 495
BSNT_05292___ 538 ATTGATCCGCTGCCGGAAACAATAGACGTAATCAGGGAAGCGGATTTGAT 587
|||||.|||||.||.|||.|.||..|.||.||..|.||||||||||||||
BPUM_3114 496 ATTGAGCCGCTCCCAGAATCGATTCAAGTCATTCGTGAAGCGGATTTGAT 545
BSNT_05292___ 588 TATTATCGGCCCGGGAAGTCTCTATACAAGCATTCTGCCCAATTTGCTCG 637
|.|.||.||.||.||.||..|.||||||||.||..||||.||.|||||.|
BPUM_3114 546 TGTGATTGGACCAGGCAGCTTGTATACAAGTATCTTGCCAAACTTGCTTG 595
BSNT_05292___ 638 TCCCAAAAATCGGGGAAGAAGTGAT------AAAGGCGCCGGCGAAAAAA 681
|.||..|.||.||.|||||.||.|| ||| ||||||||||
BPUM_3114 596 TACCGCATATTGGTGAAGAGGTCATTCGCTCAAA------GGCGAAAAAA 639
BSNT_05292___ 682 GTATACATTTGCAACGTGATGACTCAGCCCGGCGAAACGC--TCCATTAC 729
||.||.||||||||.||.|||||.|||||.||.||||||| ||| |||
BPUM_3114 640 GTGTATATTTGCAATGTCATGACGCAGCCAGGGGAAACGCTTTCC--TAC 687
BSNT_05292___ 730 ACCGCTGCTGATCATGTGAAAGCGCTCAATCAGCATATGGGCTGCGGT-- 777
|..||.||||||||||||.||||..|.||..|.||||||| |.| ||
BPUM_3114 688 AGTGCAGCTGATCATGTGCAAGCATTAAACGATCATATGG--TTC-GTCC 734
BSNT_05292___ 778 -TTTATTGATACGATATTAGTGAACAGTGAAGACATTCCCGACGAAATAA 826
|||||||||||.||.||.|||||||.|.||||.|||||.||.||.||.|
BPUM_3114 735 ATTTATTGATACCATTTTTGTGAACAATAAAGAAATTCCAGAAGAGATCA 784
BSNT_05292___ 827 AACGTAAGTACGAAATGGAATCGGCGCGTCCTGTTGATTTTGATATCGAA 876
||...||.||.|.|...|||..|||.|..|||||..|.||.||.|..||.
BPUM_3114 785 AAGCAAAATATGCAGAAGAACAGGCACAGCCTGTACAGTTCGACACAGAT 834
BSNT_05292___ 877 GAGCTGAAAGCGATGGGGCTTGAAGTCATCAGAGATCAAATTGTAACGTA 926
|..||.||.||.|||||.||.|||||||||...|...|||||.|.||.||
BPUM_3114 835 GTACTCAAGGCAATGGGACTGGAAGTCATCCCTGGGGAAATTATTACATA 884
BSNT_05292___ 927 TAAAAATGACGTAATACGTCACGATACACATAAAGTGGCCTCTCTTCTTG 976
|.|..|..|.||.||.||||||||.||.|..|||||.|||.|.||.||||
BPUM_3114 885 TGACCAGCATGTGATTCGTCACGACACGCTGAAAGTAGCCGCGCTGCTTG 934
BSNT_05292___ 977 TTGATTTACT------GAAAGAATGA- 996
|.||..|.|| ||||.||| |
BPUM_3114 935 TCGACCTGCTGCATAAGAAAAAAT-AG 960
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