Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05290 and BPUM_3112

See Amino acid alignment / Visit BSNT_05290 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_05290___crh.1.24716.seq
#    -bsequence dna-align/BPUM_3112.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05290___crh-BPUM_3112.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05290___crh-BPUM_3112.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05290___crh
# 2: BPUM_3112
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 275
# Identity:     183/275 (66.5%)
# Similarity:   183/275 (66.5%)
# Gaps:          34/275 (12.4%)
# Score: 593.5
# 
#
#=======================================

BSNT_05290___      1 ATGGTTCAACAGAAAGTGG--AAGTTCGA-TTAAAGACAGGACTGCAAGC     47
                     |||||..||   |||..||  |...||.| ||.||.|||||..||||.||
BPUM_3112          1 ATGGTGGAA---AAAACGGTCACCATCCAGTTGAAAACAGGCTTGCAGGC     47

BSNT_05290___     48 ACGTCCTGCTGCTTTGTTTGTACAAGAAGCAAACCGGTTTACGTCAGATG     97
                     .|||||.|||||||||||||||||.|||||.||.||.|||..|.|.|||.
BPUM_3112         48 TCGTCCCGCTGCTTTGTTTGTACAGGAAGCGAATCGCTTTGGGGCTGATA     97

BSNT_05290___     98 TGTTTCTTGAGAAGGATGGGAAAAAAGTAAACGCCAAAAGCATCATGGGG    147
                     |.|||||.|||||.||||||||||||||.||.||.||||||||.|||||.
BPUM_3112         98 TTTTTCTAGAGAAAGATGGGAAAAAAGTCAATGCGAAAAGCATTATGGGT    147

BSNT_05290___    148 CTGATGAGCCTGGCGGTAAGCACAGGCACTGAGGTTACCT-------TGA    190
                     ||.|||||.||.|||.|.|      ||.|||.||||| ||       |||
BPUM_3112        148 CTCATGAGTCTAGCGATCA------GCTCTGGGGTTA-CTATCACACTGA    190

BSNT_05290___    191 TTGCCCAGGGAGAAGATGAACAAGAGGCGCTGGAGAAGCTGGCAGCTTAC    240
                     ||||..|.||.|..||.||||||||.||..|.|||..|.|..|||.||..
BPUM_3112        191 TTGCAGATGGTGCGGACGAACAAGAAGCCATTGAGGCGTTAACAGATTTT    240

BSNT_05290___    241 GT---TCAAGAA----GAAGTTTAG    258
                     ||   |||||||    ||       
BPUM_3112        241 GTCAATCAAGAAAACTGA-------    258


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