Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05282 and BPUM_3108
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05282___yvcT.1.24716.seq
# -bsequence dna-align/BPUM_3108.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05282___yvcT-BPUM_3108.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05282___yvcT-BPUM_3108.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05282___yvcT
# 2: BPUM_3108
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1049
# Identity: 669/1049 (63.8%)
# Similarity: 669/1049 (63.8%)
# Gaps: 151/1049 (14.4%)
# Score: 1959.5
#
#
#=======================================
BSNT_05282___ 1 TTGAAAC----CATTTGTATTTATCACAAAACCGATT-----CCTGAAGA 41
||||.|| |||| |||.||.|.||||| ||| |||.|
BPUM_3108 1 TTGACACCACACATT----TTTGTCGCCAAACC-ATTACCCGCCTCA--- 42
BSNT_05282___ 42 GATTGAAGCATTCATCGGAGAACATTGCCGTTATGAAGTATGGCAGGAGG 91
.||||.|.|||..|....||||||||....||.||.||.|||||
BPUM_3108 43 -TTTGAGGAATTACTAAAGGAACATTGTACATACGAGGTGTGGCA----- 86
BSNT_05282___ 92 AT------ACGC--TTCCGAGTGACGTGCTATTTGAAAAATTAAAAGAAG 133
|| ||.| ||||.|..||..|..|.|||.|||||.|..|..|.|
BPUM_3108 87 ATCCAAAGACCCCATTCCAAAAGATATTTTGTTTCAAAAACTGCAGCATG 136
BSNT_05282___ 134 CGGAAGGGCTTTTAACATCAGGGACGTCCGGACCGTCAATCAATCGTGAG 183
|.||.||.|||||| |||||.|||.||..||||.|||..|||
BPUM_3108 137 CTGATGGTCTTTTA---------ACGTCTGGAACGAAAATCGATCAAGAG 177
BSNT_05282___ 184 TTGCTGGAACACGCTCCTAAGCTCAAAGTGGTCAGCAACCAATCAGTAGG 233
.|..|.||.||||||||.||.||.||.||.||.|||||..|.||.||.||
BPUM_3108 178 CTATTAGATCACGCTCCCAAACTTAAGGTAGTGAGCAATAACTCTGTTGG 227
BSNT_05282___ 234 CTACGATAATTTCGATATAGAAGCAATGAAAGAAAGAGGAGTAATCGGCA 283
|||.||.||||||||||||||||..||||...|||||||.|||||.||.|
BPUM_3108 228 CTATGACAATTTCGATATAGAAGTGATGAGGCAAAGAGGCGTAATTGGGA 277
BSNT_05282___ 284 CTCATACACCTTATACACTGGATGACACAGTTGCAGATCTGGCCTTTTCT 333
|.||.||.||..|||||||.||..|.||.||.|||||.||.||.|||||.
BPUM_3108 278 CGCACACGCCCCATACACTCGACCATACTGTCGCAGACCTTGCATTTTCA 327
BSNT_05282___ 334 CTGATTCTATCTTCCGCCAGACGTGTTGCCGAACTTGACCGTTTTGTCAG 383
||.|||||.||.||.||..||.|..|||||||.|||||.||||||.||.|
BPUM_3108 328 CTCATTCTTTCCTCTGCACGAAGAATTGCCGAGCTTGATCGTTTTATCCG 377
BSNT_05282___ 384 GGCAGGAAAATGGGGGACCGTGGAA----------GAGGAAGCGCTTTTC 423
.|..||.||.| |||| ||| ||.||||...||||.
BPUM_3108 378 TGAGGGGAATT---GGAC----GAAATTTGTACAGGAAGAAGATATTTTT 420
BSNT_05282___ 424 GGAATTGATGTTCATCATCAAACATTAGGCATTATCGGCATGGGCAGAAT 473
||.||.|||||.|||||||||||..|.||||||||.||||||||..||||
BPUM_3108 421 GGCATCGATGTCCATCATCAAACGCTTGGCATTATTGGCATGGGTCGAAT 470
BSNT_05282___ 474 AGGAGAACAAGCAGCGAGACGCGC----CAAATTTGGTTTTGATATGGAA 519
.||||||||||..||.|.|||.|| || |||||||||||||.|.
BPUM_3108 471 CGGAGAACAAGTCGCCAAACGAGCTGCTCA----TGGTTTTGATATGAAT 516
BSNT_05282___ 520 GTGCTTTATCATAACCGACA-TCGCAAACAA------GAAACAGAAGATA 562
||.||.|||.||||||| || .||.||..|| |||.|||.|.||.
BPUM_3108 517 GTCCTGTATTATAACCG-CAGCCGGAATGAAAAGGCTGAATCAGCATATG 565
BSNT_05282___ 563 GCATCGGCGTTAAGTA-TGCAGAGCTTGAT-ACATTGCTGGAGCGATCTG 610
|| ||.||| || ||||.| |||||| || |||.|..|.|.|.|||
BPUM_3108 566 GC----GCTTTA--TATTGCACA-CTTGATGAC-TTGTTAAAACAAGCTG 607
BSNT_05282___ 611 ATTTTATTCTTCTCATTACGCCGCTGACTGATGAAACCTATCACATGATA 660
||.|.|||.|..|.|||||.||||||||.||||||||.|||||.|||||.
BPUM_3108 608 ATATCATTGTCTTGATTACACCGCTGACCGATGAAACGTATCATATGATT 657
BSNT_05282___ 661 GGAGAACGCGAATTTAAGTTGATGAAGGATTCAGCAATTTTCGTCAATAT 710
||.|||||.|||||.|||||.||||||.|..|.||..|.||.||.||.||
BPUM_3108 658 GGCGAACGAGAATTGAAGTTAATGAAGCAAACGGCTTTATTTGTAAACAT 707
BSNT_05282___ 711 TTCCCG-GGGAAAGACAGTTGATG-AGAAAGCACTGATTCGCGCTCTTCA 758
.||||| |||||| |||||.|||| |.||||| ||.||||..||.|||||
BPUM_3108 708 CTCCCGCGGGAAA-ACAGTGGATGAAAAAAGC-CTCATTCAAGCACTTCA 755
BSNT_05282___ 759 GGAAGGCTGGATCAGGGGAGCCGGCCTAGATGTATACGAAAAAGAGCCTG 808
.||.||.|||||||..||.||.||.||.|||||.|..|||.|.||.||..
BPUM_3108 756 AGAGGGATGGATCAAAGGTGCAGGTCTTGATGTGTTTGAACAGGAACCGC 805
BSNT_05282___ 809 TCTCCCAAGATAATCCGCTCCT------GCAGCTGGATAATGTCACGCTG 852
| .||.||.|||| .|||| | |..||.|.||||||||.||.
BPUM_3108 806 T---TCAGGAGAATC--ATCCTTTCAAAG-AAATGAACAATGTCACCCTT 849
BSNT_05282___ 853 CTTCCTCATATCGGTTCAGCAACAGCTAAAGTGCGCTTCAACATGTG--- 899
.|.|||||.||||||||.||.||.| ||| |||||.|.|
BPUM_3108 850 GTCCCTCACATCGGTTCCGCTACTG--AAA--------CAACACGGGATC 889
BSNT_05282___ 900 -TAAACAGGCTGCCGAAAATATGATCGCAGCCATTC--AAGGACAAACAC 946
|| |||.|||| || |||||||| ||.|..|..||.
BPUM_3108 890 TTA-------TGCTGAAA-------CG-AGCCATTCATAATGTGATTCAT 924
BSNT_05282___ 947 CGAA--------AAATCTCACAAGAGA-ATT-TCAATAA---------- 975
.||| |||.| |.|.|.||| ||| |.||..|
BPUM_3108 925 GGAATTGATGGCAAAGC-CCCTATAGATATTGTGAAAGAGCTTGCTTGA 972
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