Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05179 and BPUM_3074
See
Amino acid alignment /
Visit
BSNT_05179 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05179.1.24716.seq
# -bsequence dna-align/BPUM_3074.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05179-BPUM_3074.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05179-BPUM_3074.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05179
# 2: BPUM_3074
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1748
# Identity: 921/1748 (52.7%)
# Similarity: 921/1748 (52.7%)
# Gaps: 532/1748 (30.4%)
# Score: 2064.5
#
#
#=======================================
BSNT_05179 0 -------------------------------------------------- 0
BPUM_3074 1 ATGAATCGAGCATTTCTTTACAACGCCAGTGCAAACATCATGACGTTTGT 50
BSNT_05179 1 -------------ATG------------ACGCCTTTTATTGTCAAAACGC 25
||| |||||.|..||.||..|.||.|
BPUM_3074 51 CTTGATGATGCTAATGTCTGTTTGTTTAACGCCGTACATCGTTCATACAC 100
BSNT_05179 26 TCGGTGTGGAAGCGTTTGGCTTTGTTCACTTGACACAAAATGTGATTAAT 75
|.||.||.|||||.||.|||||..|.||..||||.||||||.||||.||.
BPUM_3074 101 TTGGAGTCGAAGCATTCGGCTTAATCCATCTGACGCAAAATATGATCAAC 150
BSNT_05179 76 TACTTTTCGGTTATTACCGTGGCGCTCA------GCTCGGTTGTCGTTCG 119
||.||.||||||||.|| ||| .||| ||| |||||.||.||
BPUM_3074 151 TATTTATCGGTTATCAC---GGC-TTCATTAAGTGCT--GTTGTGGTGCG 194
BSNT_05179 120 GTTCTTTTCTGTTGCTGCCC--ACAGGGGAGAGCGGGAGAAAGCAAATGC 167
.||.||||||||.||.||.| |.||||||.|.| |||||.||..| ||
BPUM_3074 195 CTTTTTTTCTGTGGCGGCTCATAAAGGGGAAATC--GAGAAGGCGCA-GC 241
BSNT_05179 168 G-------------TATATCAGC------AATTATTTAGCGGCC--TCTG 196
| |||.||..| |.||.||||.||..| ||||
BPUM_3074 242 GCTATCTCTCATCTTATTTCGTCAGTTCTATTTTTTTATCGATCAGTCTG 291
BSNT_05179 197 TTT-TGATTTCATTG-CTGCTCTTGCTGCCGCTTGCGGGT----TCGGCT 240
||| ||.| ||| |||.||.|| |..|||..||.||| | ||||
BPUM_3074 292 TTTCTGTT----TTGTCTGTTCATG-TCACGCCAGCTGGTAGAGT-GGCT 335
BSNT_05179 241 TTTTTTATTGACCGCGTCATGAATGTGC----------CGCAAGCGCTTT 280
| .|||||| |||||
BPUM_3074 336 T--------------------CATGTGCCTGGTGATCTCGCAA------- 358
BSNT_05179 281 TGG-----CAGATGTGCGTTTGTCGATTTTAATCGGCAGTTTGCTGTTTA 325
.|| |||| ..||.||| ||.||| ||..||.| ||||
BPUM_3074 359 AGGATACACAGA-CCGCCTTT----ATATTA---GGGGGTCT----TTTA 396
BSNT_05179 326 TTT----TAACGTTTCTGATGGCGGGTTTCGGTGCTGCACCATTTTATGC 371
||| |.|..|||.|.|||.||||..|.||.|||||.||.||||||||
BPUM_3074 397 TTTATGCTCAATTTTGTCATGTCGGGCATTGGGGCTGCGCCGTTTTATGC 446
BSNT_05179 372 CAACCGCCT---TTA----TATCACCAGTTCCAT---TCAGGCGGTGCAA 411
.|| | ||| ||||| ||| || ||||.|..|.|||
BPUM_3074 447 GAA-----TAAGTTATATGTATCA--AGT---ATTGGTCAGACCATTCAA 486
BSNT_05179 412 ATGCTTATACGGG---TGCTGTCTGTGCTGCTCCTGTTTGCATGCTTTG- 457
|||.||.|..||| ||.||..||||.|| ||||||.|||| |
BPUM_3074 487 ATGTTTTTGAGGGCACTGATGATTGTGATG---CTGTTTACATG----GA 529
BSNT_05179 458 -------CGCCGAAAATCTGGCAGA-TCCAGCTTGCAGCTTTAGCTGGT- 498
|||| ||||||||.| |||| |||||.||| |||.|
BPUM_3074 530 CGGCACCCGCC----ATCTGGCATATTCCA-CTTGCGGCT----CTGATA 570
BSNT_05179 499 -GCTGTTATTGCGTCTGTG---CTGTCTTTCTATTTCTTCAAAAAGCTGA 544
|..||| |.|||.||.|| .|...|.||||||..||.|||||.||.|
BPUM_3074 571 GGAAGTT-TGGCGGCTATGGGAATAGGTATCTATTATTTTAAAAAACTTA 619
BSNT_05179 545 TTCCGTGGTTTTCGTTT-----------CGTATGAAGGATCTTTCATTC- 582
|.||.|||||||||||| ||| |..|..|||||..|.||
BPUM_3074 620 TCCCTTGGTTTTCGTTTAAGTGGCGGCACGT-TTCACTATCTTCTAGTCT 668
BSNT_05179 583 CGCACTAGCAAGGAGCTGTT---TCAAGCGGGC--GCATGGAGCTCCGTC 627
|.|||| |||| || ||.||.| |||| ||..|.
BPUM_3074 669 CACACT----------TGTTCGATC-AGGGGTCTGGCAT-----TCTTTT 702
BSNT_05179 628 AATCAAATCGGCGTCCTGCTTTTTTTGCAGATTGATCTGTTAACCGCCAA 677
.|.|||||.||..|..|..|.|||.|.|||||||||.|.||.|...|.||
BPUM_3074 703 GAGCAAATGGGGATTTTATTATTTCTACAGATTGATTTATTGATGACGAA 752
BSNT_05179 678 TTTGATGCTTGGGGCGTCCGCATC--CGGGA-AATACGCGGCGATTATCC 724
|.||.|..||||.||| |.|.| ||||| |.||.||||||||..|.|
BPUM_3074 753 TCTGCTCATTGGAGCG---GAAGCGACGGGACAGTATGCGGCGATATTAC 799
BSNT_05179 725 AGTTTCCGCTGCTTTTGCGCAGCTTGGCCGGAA------CGGTCGCATCC 768
|.|||||..|.||.||.||||...|.||.|||| ||||.|
BPUM_3074 800 AATTTCCATTACTATTACGCACACTCGCAGGAACATTGGCGGTTG----- 844
BSNT_05179 769 CTGTTTGCGCCCATC-ATGACTTCATATTATTCAAAAGGCGATATG--GA 815
||||||| ||||.| ||.||...||.|||.||.|| .|.|.||| ||
BPUM_3074 845 -TGTTTGC-CCCAACGATTACCAAATTTTACTCGAA--TCAAGATGAAGA 890
BSNT_05179 816 AGGATTGATGAATTACGCCAATAAGGCAG----------TAAG----GCT 851
|||..|.|| ||||| |.|||| |||| ||
BPUM_3074 891 AGGTCTCAT--------CCAAT-ATGCAGCGAGTGCCATTAAGTGGAGC- 930
BSNT_05179 852 CAATGGTCT-TTTGCTTGCACTTCCTGCTGCCTTATTGGGCGGATTGGCG 900
|||.| |||| |.||..||||.||.||..|..|.||.|||.|.||.
BPUM_3074 931 ----GGTTTATTTG-TCGCGTTTCCAGCCGCTCTGCTCGGAGGACTTGCC 975
BSNT_05179 901 GGAC--------CTTTTCTGACAATCTGGCTCGGACCGTCCTTTTCAACG 942
||.| |||| |.|||||.|||||..||||| |
BPUM_3074 976 GGTCCACTCATGCTTT--------TATGGCTTGGACCTGCCTTT-----G 1012
BSNT_05179 943 -ATAGC----ACCGCTTTTATTTATTCATGCCGGATACTTGGTTGTCAGC 987
|.||| |..||||.|..|.|||||||| |.|||..||.| ||
BPUM_3074 1013 AAGAGCTGAAATGGCTTCTCATGATTCATGC----TGCTTATTTAT--GC 1056
BSNT_05179 988 CTCGCCTTTATG------CCGCTGTTTTATATATG----GACCGCTTTTA 1027
.|..||||.||| |||||| |.||||| .||||||||||
BPUM_3074 1057 TTGACCTTGATGTTTTTACCGCTG----ACATATGTGCCCACCGCTTTTA 1102
BSNT_05179 1028 ATCAACAAAAAACACCGGCGATTGTTACCCTGCTGTTAGGTG----CGGT 1073
|||.|...||....||||||.|.||.||.||..|.||||||| |
BPUM_3074 1103 ATCGATTGAAGGTTCCGGCGGTGGTCACGCTCATATTAGGTGTATCC--- 1149
BSNT_05179 1074 GAATGTGGTGCTGGC----GG------TC--ACGCTGAGCGGGCCGGCTC 1111
||||||.|..|.|| || || |.||| ||
BPUM_3074 1150 -AATGTGCTTTTTGCCTATGGATTGACTCATATGCT------------TC 1186
BSNT_05179 1112 ATCTCGGTCTGTACGGCATAACATTGGCAGGGGCCATTTCTCTTATT-TT 1160
|.||.|||.|.||.|||||..|||..||.||.||.| ||.|.||||| .|
BPUM_3074 1187 AGCTTGGTTTATATGGCATTGCATCAGCGGGAGCGA-TTGTTTTATTGAT 1235
BSNT_05179 1161 AAAAAATGCCATCTTTACGCCGCTTTACGTA--TCCCGCATTACAGGCTA 1208
.||||||..|.|.|||..|||..|||| || .||||||| ||.|..|
BPUM_3074 1236 CAAAAATATCGTGTTTCTGCCATTTTA--TACGGCCCGCAT--CACGAAA 1281
BSNT_05179 1209 CAAAAA--GCACGTGTTCTTTAAAGGCAT--CATCGGGCTTCTTTCAGCC 1254
||.||| |..|.|.||.|.|||| ||| .||||..|..|||.|||..
BPUM_3074 1282 CAGAAACGGACCATCTTTTATAAA--CATACAATCGTTCCACTTGCAGGA 1329
BSNT_05179 1255 GC-----TGTATTTGCCTGGGCGGTCTGT-AAGGCAATTCAGTTCGTTGT 1298
|| || ||||| |||| |||||| .||| |||||
BPUM_3074 1330 GCGCTCATG-ATTTG---GGGC-GTCTGTGCAGG-AATTC---------- 1363
BSNT_05179 1299 GAAG--AT---TGACAGCTGGCCGTCATTGATAGCGACGGGAG-TGACAG 1342
||| || |||| .||.|| |||| |..||||| ||
BPUM_3074 1364 -AAGCAATTTATGAC--GTGACC-TCAT-------GGTGGGAGCTG---- 1398
BSNT_05179 1343 TCAGCTTTTGCTA--CGCTGTTTTCGCT------TTTAT----GCT-CGT 1379
||||| || .||.|||||.|.| ||||| ||| |
BPUM_3074 1399 -----TTTTG-TATTGGCGGTTTTTGTTTCTTTCTTTATTTGGGCTAC-- 1440
BSNT_05179 1380 TTGT--------------ACAAA---AGAG-GAAAGACAGCTGGT-ATTA 1410
|||| ||||| |||| |..|| |||||||| |.||
BPUM_3074 1441 TTGTATCAATTTGCAGGAACAAAACGAGAGCGGCAG-CAGCTGGTGAGTA 1489
BSNT_05179 1411 AAACGGTTTCGAAAAACGAAAGGAGCTGT---------GAATCTTTGA 1449
| ||| ||||..|||||| |
BPUM_3074 1490 A---GGT----------GAAACAAGCTGTTTCCCGCTAG--------- 1515
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.