Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05177 and BPUM_3073
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05177___yvfC.1.24716.seq
# -bsequence dna-align/BPUM_3073.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05177___yvfC-BPUM_3073.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05177___yvfC-BPUM_3073.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05177___yvfC
# 2: BPUM_3073
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity: 404/658 (61.4%)
# Similarity: 404/658 (61.4%)
# Gaps: 113/658 (17.2%)
# Score: 1197.5
#
#
#=======================================
BSNT_05177___ 1 TTGATCCTGAAACGACTTTTTGATCTGACGGCCGCCATT----------- 39
.|||||.||.|.||.|||.|||.|| .|.||||
BPUM_3073 1 ------ATGAAAAGAATGTTAGATGTGATGG-TGGCATTGACGCTGCTCA 43
BSNT_05177___ 40 ---------------TTTTTGTTGTGCTGTACAAGTGTGA-TCATTCTGT 73
|||||.||.||||||| || || |.||||
BPUM_3073 44 TCGCAGGCAGTCTTCTTTTTCTTCTGCTGTA----TG-GACTGATTC--- 85
BSNT_05177___ 74 TCACCATCGCCGTTGTCAGGCTGAAAATAGGATCACCTGTCTTCTTT--- 120
||..||||||.||..|.|||||.||.|||
BPUM_3073 86 ------------------GGTGGAAAATTGGGACGCCTGTGTTGTTTCGG 117
BSNT_05177___ 121 ---AAGCAAGTAAGGCCGGGCCTGCACGGCAAACCGTTCACCCTATATAA 167
|||| ||||.||.||..|.|||...||.||.|..||.|||||
BPUM_3073 118 CAGAAGC------GGCCTGGTCTATATGGCCGGCCATTTATGCTGTATAA 161
BSNT_05177___ 168 GTTCCGGACAATGACGGATGAACGGGAC-AG--TGAGGGAAAT-CTGCTG 213
.||.|||||.|||||.||||||||.||| || ||.|| | ||.|||
BPUM_3073 162 ATTTCGGACGATGACCGATGAACGCGACGAGCATGGGG----TGCTCCTG 207
BSNT_05177___ 214 CCCGATGAAGTCCGGCTGACGAAAACGGGCAGGC--TGATCAGAAAGCTG 261
||.|||.|..|.||..|.||.|||||.||| || ||||..|.|||||.
BPUM_3073 208 CCAGATCATCTTCGATTAACAAAAACCGGC--GCCTTGATTCGCAAGCTC 255
BSNT_05177___ 262 AGCATTGATGAGCTTCCGCAGCTCCTGAATGTCCTGAAGGGCGATCTGAG 311
||..|||||||..|.||||||||..|.||||||||.||.||.||.||.||
BPUM_3073 256 AGTCTTGATGAATTGCCGCAGCTAGTCAATGTCCTAAAAGGAGAGCTTAG 305
BSNT_05177___ 312 CCTTGTCGGGCCGCGGCCGCTTTTGATGGACTATCTGCCTCTTTATACAG 361
.||.||.||.||..||||||||||||||||.|||.||||..|.|||||||
BPUM_3073 306 TCTCGTTGGACCAAGGCCGCTTTTGATGGAGTATTTGCCAATGTATACAG 355
BSNT_05177___ 362 AAAAACAGGCACGGCGCCATGAGGTGAAGCCGGGTATCACAGGCTGGGCG 411
|..|.||.|||.||||||||...||.|||||.||.||.||.||.|||||.
BPUM_3073 356 AGGAGCAAGCAAGGCGCCATCTTGTCAAGCCTGGCATTACTGGATGGGCA 405
BSNT_05177___ 412 CAAATCAATGGCAGAAACGCGATTTCCTGGGAAAAGAAATTTGAATTA-G 460
||..|.|||||.||.|||.||||.||||||||..||||| ||.|..|| |
BPUM_3073 406 CAGGTGAATGGAAGGAACACGATCTCCTGGGAGGAGAAA-TTCACCTATG 454
BSNT_05177___ 461 ATGTTTGGTACGTTGA----CAACCGGTCATTTTTTCTCGATTTGAAAAT 506
|..|.|||||.||.|| ||| |||||||..||.|||.|||||||
BPUM_3073 455 ACCTCTGGTATGTCGAGCATCAA----TCATTTTGGCTTGATATGAAAAT 500
BSNT_05177___ 507 TTTATGTTTGACGGTGC-GAAAGGTCCTTGTT----TCAGAAGGGATTCA 551
||||||..||||..||| ||||| ||.| .||||.|||.|.||
BPUM_3073 501 TTTATGGATGACCTTGCTGAAAG-----TGATCAAAACAGAGGGGGTGCA 545
BSNT_05177___ 552 GCAAACCAATCATGTGACCGCGGAACGGTTTACCGGAAGCGGAGATGTGT 601
|||..|..||||||..||.||.|||...||.|..|||| |.||.||||..
BPUM_3073 546 GCAGCCGCATCATGCCACAGCTGAAAAATTCAAAGGAA-CCGATATGTAA 594
BSNT_05177___ 602 CCTCATGA 609
BPUM_3073 594 -------- 594
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