Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05168 and BPUM_3062
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_05168.1.24716.seq
# -bsequence dna-align/BPUM_3062.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05168-BPUM_3062.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05168-BPUM_3062.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05168
# 2: BPUM_3062
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity: 478/811 (58.9%)
# Similarity: 478/811 (58.9%)
# Gaps: 161/811 (19.9%)
# Score: 1370.5
#
#
#=======================================
BSNT_05168 1 TTGAAATACAAACAGATTAAAACAAAAAAAATATATGAAGAAGTAGCGGA 50
||||||||.|||||.||.|||||.||||||||||||||||||.|.|||||
BPUM_3062 1 TTGAAATATAAACAAATCAAAACCAAAAAAATATATGAAGAAATTGCGGA 50
BSNT_05168 51 TGCACTATTAGATATGATCAAAAACGGCGAATTGAAG--------CCTGG 92
||||.||.|.|| |||.| ..||.|.||..| ||.||
BPUM_3062 51 TGCATTAATCGA----ATCCA----TTCGTACTGGTGAGCTTCTTCCGGG 92
BSNT_05168 93 GGATAAACTGGACTCTGTTCAGGCGCTTGCTGAGAGCTTTCAAGTCAGCC 142
.||.|||.|.||.||.|||||.|||||..|.||.||||||||||||||||
BPUM_3062 93 AGAAAAATTAGATTCGGTTCAAGCGCTCTCAGAAAGCTTTCAAGTCAGCC 142
BSNT_05168 143 GTTCAGCGGTTCGCGAAGCACTTTCTGCGCTAAAGGCGATGGGGCTTGTC 192
||||.||.||..|.||.||.||.|||||.||.|||||.||.||..|..|.
BPUM_3062 143 GTTCCGCTGTGAGAGAGGCGCTGTCTGCTCTCAAGGCAATCGGATTAATA 192
BSNT_05168 193 GAAATGAAACAGGGAGAAGGCACGTATCTGAAGGAATTTGA-GCTCAATC 241
|||||||||||.||.||||||||.|||.|||||.|.||.|| .||.||
BPUM_3062 193 GAAATGAAACAAGGGGAAGGCACATATGTGAAGCAGTTCGATCCTGAA-- 240
BSNT_05168 242 AAATTTCTCAGC-CGC----------TCTCAGCCGCCCTTCTGATGAAAA 280
|||| ||| |||| |.||..||.|.|||||..
BPUM_3062 241 --------CAGCTCGCATTTTCTTTATCTC--CTGCATTTTTAATGAAGC 280
BSNT_05168 281 AAGAGGACGTCAAGCAGCTGCTCGAGGTCAGAAAACTGCTTGAAA----- 325
|..|.||.||||..|||||.||.||.||.||||.|.|..||||||
BPUM_3062 281 AGCATGATGTCAGACAGCTCCTTGAAGTGAGAACAATTATTGAAACAGGT 330
BSNT_05168 326 ------------TCGGCGTGGCTTCACTAGCGGCTGAAAAAAGGACAGAA 363
.||||.|.||||| ||||.||.
BPUM_3062 331 GCTGTCAAAAAGGCGGCATTGCTTC-----------------GGACGGAC 363
BSNT_05168 364 GCAGATC-TCAAAAGAATTCATGATGCACT-----AAAGGAAATGGGC-A 406
|..||.| |||..|| .|.|.||||||||| |||.||| || |
BPUM_3062 364 GATGACCTTCATCAG-CTGCGTGATGCACTCGCACAAATGAA----GCAA 408
BSNT_05168 407 GCATTGAAGCGGACGGG--GAGCTGGGAGAGAAAGCAGACTTTGCATTTC 454
||| ||||| .||.| ||..|.||.||..|.|||||..|..|.||.|
BPUM_3062 409 GCA--GAAGC--CCGTGAAGAAATTGGTGAAGAGGCAGATCTCACCTTCC 454
BSNT_05168 455 ATCTTGCGCTTGCGGACGCTTCTCAAAATGAACTTCTTAAA-CACTTGAT 503
|||||||..|.||..|.||.||..|.|||| ||.|.||||| ...||.||
BPUM_3062 455 ATCTTGCATTAGCCAAAGCCTCGAAGAATG-ACATATTAAAGGTGTTAAT 503
BSNT_05168 504 GAATCACGTGTCATCATTGCTGCTGGAAACAATGAGGGAAACGAGGAAAA 553
||||||.||.|||.|.|||.|..|.|||||.|||.||||||||||.|||.
BPUM_3062 504 GAATCAAGTCTCAACCTTGTTAGTAGAAACGATGCGGGAAACGAGAAAAG 553
BSNT_05168 554 TCTGGCTGTTTTCCAAGAAGACCTCCGTTCAGCGGCTGTATGAGGAGCAC 603
||..|.|.||.||.|.|||..|.||..|.|.|..|||.||.||.||.||.
BPUM_3062 554 TCGTGTTATTCTCAACGAAAGCATCGATCCGGAAGCTTTACGAAGAACAT 603
BSNT_05168 604 GAACGGATTTACAATGCTGT--------GGCTGCCGG--GAACGGTGCAC 643
||||..||||||||.||.|| |||.|||.| ||| |||.
BPUM_3062 604 GAACAAATTTACAAAGCCGTCATGGCCAGGCAGCCAGAAGAA----GCAG 649
BSNT_05168 644 AGGCGGAAGCCGCCATGCTGGCGCATTTGACGAATGTGGAAGATGTGCTT 693
| ||| .||.|||||..|||||||||..|||||.|||.|..|||
BPUM_3062 650 A----GAA--AGCGATGCTTACGCATTTGAAAAATGTAGAAAACTTGC-- 691
BSNT_05168 694 TCGG-GATATTTCGAGGAAAATGTGCAATAA------------------- 723
|||| | ||||||.|.||
BPUM_3062 692 TCGGTG--------------ATGTGCTAAAAAAACCAGTAGAACAGTCAG 727
BSNT_05168 723 ----------- 723
BPUM_3062 728 ATACACAATAA 738
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