Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06185 and BPUM_3060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06185___rocD.1.24716.seq
# -bsequence dna-align/BPUM_3060___rocD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06185___rocD-BPUM_3060___rocD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06185___rocD-BPUM_3060___rocD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06185___rocD
# 2: BPUM_3060___rocD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1250
# Identity: 873/1250 (69.8%)
# Similarity: 873/1250 (69.8%)
# Gaps: 67/1250 ( 5.4%)
# Score: 2965.5
#
#
#=======================================
BSNT_06185___ 1 ATGTTGAAACAGAAAACAAGGGGGAATTCAAATATGACAGCTTTATCTAA 50
|||||| .|
BPUM_3060___r 1 ---------------------------------ATGACA---------CA 8
BSNT_06185___ 51 ATCCAAAGAAATTATTGATCAGACGTCTCATTACGGAGC--CAACAATTA 98
..|.||||||.|.|||.|.||.||....||.||.||||| || ||.||
BPUM_3060___r 9 GACAAAAGAATTGATTCAACAAACAGAACAATATGGAGCGGCA--AACTA 56
BSNT_06185___ 99 TCATCCGCTCCCGATTGTTATTTCTGAAGCGCTGGGTTCTTGGGTAAAGG 148
||||||.||.||.|||||.|||||.||.||...|||....|||||.|..|
BPUM_3060___r 57 TCATCCACTGCCAATTGTCATTTCAGAGGCTGAGGGAGTGTGGGTGACAG 106
BSNT_06185___ 149 ACCCGGAAGGCAATGAATATATGGATATGCTGAGTGCTTATTCTGCGGTA 198
||||.|||||||||..|||||||||||||||.|||||.||||||||.||.
BPUM_3060___r 107 ACCCTGAAGGCAATCGATATATGGATATGCTAAGTGCGTATTCTGCAGTG 156
BSNT_06185___ 199 AACCAGGGGCACAGACACCCGAAAATCATTCAGGCATTAAAGGATCAGGC 248
|||||.||.||..|.|||||....||||||.|.||..||||..|.|||||
BPUM_3060___r 157 AACCAAGGACATCGCCACCCTCGCATCATTGAAGCGCTAAAAAAACAGGC 206
BSNT_06185___ 249 TGATAAAATCACCCTCACGTCACGCGCGTTTCATAACGATCAGCTTGGGC 298
.||.....|.||.||||||||..|.||.||||||||.|||||||||||.|
BPUM_3060___r 207 AGACCGTGTGACACTCACGTCGAGAGCCTTTCATAATGATCAGCTTGGCC 256
BSNT_06185___ 299 CGTTTTACGAAAAAACAGCT----AAACTGACAGGCAAAGAGATGATTCT 344
|.|..||.||.|||| | ||||||||....|||||.|||...||
BPUM_3060___r 257 CTTGGTATGAGAAAA----TTTGCAAACTGACGAATAAAGACATGGCACT 302
BSNT_06185___ 345 GCCGATGAATACAGGAGCCGAAGCGGTTGAATCCGCGGTGAAAGCGGCGA 394
.||.|||||||||||.||.||.||.||.|||.|.||..|.|||||.||.|
BPUM_3060___r 303 CCCAATGAATACAGGTGCTGAGGCTGTAGAAACAGCCATAAAAGCCGCAA 352
BSNT_06185___ 395 GACGCTGGGCGTATGAAGTGAAGGGCGTAGCTGACAATCAAGCGGAAATT 444
|||||||||..|||||.||.|||||..|.|..||.||.|..||.|||||.
BPUM_3060___r 353 GACGCTGGGGCTATGATGTAAAGGGAATCGAAGAGAACCGTGCAGAAATC 402
BSNT_06185___ 445 ATCGCATGTGTCGGGAACTTCCACGGCCGCACGATGCTGGCGGTATCTCT 494
||.||.|||||.||.||.|||||.||..|.||||||..|||.||.|||||
BPUM_3060___r 403 ATTGCGTGTGTTGGCAATTTCCATGGGAGAACGATGACGGCTGTGTCTCT 452
BSNT_06185___ 495 TTCTTCTGAAGAGGAATATAAACGAGGATTCGGCCCGATGCTTCCGGGAA 544
|||.||.||||..||||||.||.||||.|||||.||.||||||||.||||
BPUM_3060___r 453 TTCCTCAGAAGCAGAATATCAAAGAGGTTTCGGTCCAATGCTTCCTGGAA 502
BSNT_06185___ 545 TCAAACTCATTCCTTACGGCGATGTGGAAGCGCTTCGACAGGCCATTACG 594
|.||.||.|||||||||||.|||.|.||||||.|.||..|.||.||.||.
BPUM_3060___r 503 TTAAGCTGATTCCTTACGGAGATATTGAAGCGTTACGTGAAGCAATCACA 552
BSNT_06185___ 595 CCGAATACAGCGGCATTCTTGTTTGAACCGATTCAAGGCGAAGCGGGTAT 644
||..|.||||||||.|||.|..||||||||||||||||.|||||.|||||
BPUM_3060___r 553 CCACAGACAGCGGCTTTCCTCATTGAACCGATTCAAGGTGAAGCAGGTAT 602
BSNT_06185___ 645 TGTAATTCCGCCGGAAGGATTTTTACAGGAAGCGGCGGCGATTTGTAAGG 694
|||.||.|||||.||||||||.||..|.||.||....|||.|||||.|..
BPUM_3060___r 603 TGTCATGCCGCCAGAAGGATTCTTGAAAGATGCAAAAGCGCTTTGTGAAC 652
BSNT_06185___ 695 AAGAGAATGTCTTGTTTATTGCGGATGAAATTCAAACGGGTCTCGGACGT 744
||||..||||..||||.|||||.||||||||||||..|||..|.|.|||.
BPUM_3060___r 653 AAGAACATGTGCTGTTCATTGCAGATGAAATTCAAGTGGGATTAGCACGA 702
BSNT_06185___ 745 ACAGGCAAGACGTTTGCCTGTGACTGGGACGGCATTGTTCCGGATATG-- 792
|||||.||||.||||||.|||||.|||||.|.|||||..||.||||||
BPUM_3060___r 703 ACAGGTAAGATGTTTGCTTGTGATTGGGAAGACATTGAGCCAGATATGCT 752
BSNT_06185___ 793 TATATCTTGGGCAAAGCGCTTGGCGGCGGTGTGTTCCCGATCTCATGCAT 842
.|| ||||||| |||||..|.||||||||.||.|||||.||||||||..|
BPUM_3060___r 753 GAT-TCTTGGG-AAAGCTTTAGGCGGCGGAGTATTCCCAATCTCATGTGT 800
BSNT_06185___ 843 TGCGGCGGACCGCGAGATCTTAGGCGTGTTTAACCCTGGCTCACACGGCT 892
.|..||..||||.||.||.|||.|.|||||||||||.||.||.||.||.|
BPUM_3060___r 801 CGTAGCAAACCGTGATATTTTATGTGTGTTTAACCCCGGTTCTCATGGGT 850
BSNT_06185___ 893 CCACATTTGGCGGAAACCCGCTTGCATGTGCAGTGTCTATTGCCTCATTG 942
|.||.|||||.|||||.||.|||||||||||.|||||..||||..||.||
BPUM_3060___r 851 CTACTTTTGGAGGAAATCCACTTGCATGTGCGGTGTCGCTTGCTGCACTG 900
BSNT_06185___ 943 GAAGTGCTGGA-GGATGAAAAGCTGGCGGATCGTTCTCTTGAGCTTGGAG 991
||.|| ||..| .||.|||||.||.||.|..||.|||.|.||||||||.|
BPUM_3060___r 901 GATGT-CTTAATCGACGAAAAACTTGCAGCACGCTCTATGGAGCTTGGTG 949
BSNT_06185___ 992 AATACTTTAAAAGCGAGCTTGAGA-GCATTGACAACCCGGTTATTAAAGA 1040
||||| ||.||||..|..|||..| |||||.|.|..||..|.||||||||
BPUM_3060___r 950 AATAC-TTCAAAGACAAATTGTCACGCATTCAAAGTCCTATGATTAAAGA 998
BSNT_06185___ 1041 AGTCCGCGGCAGAGGGCTGTTTATCGGTGTGGAATTGACTGAAGCGGCAC 1090
|||.|||||..|.||.||.|||||.||..||||..||||.||.||.||..
BPUM_3060___r 999 AGTGCGCGGACGCGGACTATTTATAGGCATGGAGCTGACAGAGGCAGCTA 1048
BSNT_06185___ 1091 GTCCGTATTGTGAGCGTTTGAAGGAAGAAGGGCTTTTATGCAAGGAAACG 1140
|.||.||||||||....||.||..|||.|||..|.|||||.||||||||.
BPUM_3060___r 1049 GACCTTATTGTGAAAAGTTAAAACAAGCAGGTTTGTTATGTAAGGAAACC 1098
BSNT_06185___ 1141 CATGATACAGTCATTCGTTTTGCACCGCCATTAATCATTTCCAAAGAGGA 1190
|||||.||.|||||.|||||||||||.||..|.|.||||||.|||||.||
BPUM_3060___r 1099 CATGAAACCGTCATCCGTTTTGCACCACCGCTGACCATTTCAAAAGAAGA 1148
BSNT_06185___ 1191 TTTGGATTGGGCGATAGAGAAAATT-AAGCACGTGCTGCAAAACGCATAA 1239
|||.||.||||||||.|...|.||| ||||| .||.|.||| ||.|||
BPUM_3060___r 1149 TTTAGACTGGGCGATTGGTCATATTGAAGCA-TTGTTTCAA---GCTTAA 1194
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