Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05133 and BPUM_3056
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_05133___pgk.1.24716.seq
# -bsequence dna-align/BPUM_3056___pgk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05133___pgk-BPUM_3056___pgk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05133___pgk-BPUM_3056___pgk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05133___pgk
# 2: BPUM_3056___pgk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1202
# Identity: 947/1202 (78.8%)
# Similarity: 947/1202 (78.8%)
# Gaps: 34/1202 ( 2.8%)
# Score: 3729.5
#
#
#=======================================
BSNT_05133___ 1 ATGAATAAAAAAACTCTCAAAGACATCGACGTAAAAGGCAAAGTTGTATT 50
||||||||.|||.|..|.||||||||.|||||||||||.||||||||.||
BPUM_3056___p 1 ATGAATAAGAAATCAGTAAAAGACATTGACGTAAAAGGTAAAGTTGTGTT 50
BSNT_05133___ 51 CTGCCGCGTCGACTTTAACGTTCCAATGAAAGACGGGGAAGTAACAGACG 100
|||||||||.||.|||||||||||||||||||||||..||||.||.||.|
BPUM_3056___p 51 CTGCCGCGTAGATTTTAACGTTCCAATGAAAGACGGAAAAGTGACGGATG 100
BSNT_05133___ 101 ATACACGTATCCGTGCTGCGCTTCCAACAATCAAACACCTTGCAGACCAA 150
||||.|||||.||.||.||..|.|||||.||..|..|..|..|||..|||
BPUM_3056___p 101 ATACTCGTATTCGCGCAGCATTACCAACGATTGAGTATTTAACAGGACAA 150
BSNT_05133___ 151 GGCGCGAAAGTCCTTCTTGCGAGCCACTTAGGCCGCCCGAAAGGCGAAGT 200
|||||.||.||.||.||.||.||.||.||.||.||.|||||.||..||||
BPUM_3056___p 151 GGCGCAAAGGTACTACTAGCTAGTCATTTGGGTCGTCCGAAGGGTCAAGT 200
BSNT_05133___ 201 GGTTGAGGAGCTTCGTTTAACTCCTGTCGCTGCACGTCTCGGC--GAACT 248
...|||.||..|.|||.|.||.|||||.||...|||||| || ||.||
BPUM_3056___p 201 TACTGAAGAATTGCGTCTGACACCTGTAGCGAAACGTCT--GCAAGAGCT 248
BSNT_05133___ 249 GCTTGGAAAAGAAGTGAAAAAAGCGGATGAAGCATACGGCGATGC----T 294
.||||||.|||||||||||||||||||||||||.|||||||| | |
BPUM_3056___p 249 TCTTGGACAAGAAGTGAAAAAAGCGGATGAAGCTTACGGCGA--CAACGT 296
BSNT_05133___ 295 GTAAAAGCACAAATTTCCGAGATGAAGGACGGAGACGTTCTTGTATTGGA 344
|.||||| |||||.||.||..|.||.||.|||||.||.||.||..|.||
BPUM_3056___p 297 GAAAAAG--CAAATCTCTGACTTAAAAGATGGAGATGTGCTAGTGCTTGA 344
BSNT_05133___ 345 AAACGTACGTTTCTATCCTGGTGAAGAGAAAAATGACCCTGAACTTGCAA 394
||||||.||||||||||||||||||||.||.||.||.||||||||..|||
BPUM_3056___p 345 AAACGTTCGTTTCTATCCTGGTGAAGAAAAGAACGATCCTGAACTATCAA 394
BSNT_05133___ 395 AAGCATTTGCTGAGCTTGCAGATGTATATGTAAATGACGCATTCGGTGCT 444
|||||||||||||..|.||.|||||.|||||.|||||.||.|||||||||
BPUM_3056___p 395 AAGCATTTGCTGATTTAGCTGATGTGTATGTCAATGATGCGTTCGGTGCT 444
BSNT_05133___ 445 GCCCACCGTGCTCACGCATCTACAGCTGGAATTGCCGAGC--ATCTGCCA 492
||.||||||||.||.|||||.||.||||||||||| ||| ||||.||.
BPUM_3056___p 445 GCACACCGTGCACATGCATCCACTGCTGGAATTGC--AGCATATCTTCCG 492
BSNT_05133___ 493 GCAGTTGCAGGTTTCTTAATGGAAAAAGAGCTTGATGTACTTGGAAAAGC 542
||.|||.|.||.|||.|.|||.|||||||||||||.||.||.||||||||
BPUM_3056___p 493 GCTGTTTCGGGCTTCCTCATGCAAAAAGAGCTTGAGGTTCTAGGAAAAGC 542
BSNT_05133___ 543 GGTTTCCAATCCTGACCGCCCGTTCACAGCGATCATCGGCGGAGCGAAAG 592
..||||.||.|||||.|||||.||.||||||||.||.||.||.||.||||
BPUM_3056___p 543 CATTTCAAACCCTGATCGCCCATTTACAGCGATTATTGGTGGCGCAAAAG 592
BSNT_05133___ 593 TAAAAGACAAAATCGGTGTAATCGAAAGTCTTCTTGATAAAGTAGACAAC 642
||||.||.|||||||||||.||.||||||||||||||||||||.||||||
BPUM_3056___p 593 TAAAGGATAAAATCGGTGTGATTGAAAGTCTTCTTGATAAAGTGGACAAC 642
BSNT_05133___ 643 CTGATCATCGGCGGAGGTCTTGCTTATACTTTCGTAAAAGCGCTTGGCTA 692
||.|||||||||||.||.|||||||||||.||.||||||||.||||||.|
BPUM_3056___p 643 CTCATCATCGGCGGCGGACTTGCTTATACATTTGTAAAAGCACTTGGCCA 692
BSNT_05133___ 693 TGAAGTCGGTAAATCTCTTCTTGAAGAGGATAAAATCGAGCTTGCGAAAT 742
.|||||.||.||||||||..|.|||||.||.|||.|.||..|.|||||||
BPUM_3056___p 693 CGAAGTAGGGAAATCTCTATTAGAAGAAGACAAAGTAGATTTAGCGAAAT 742
BSNT_05133___ 743 CATTTATGGACCGCGCTAAAGAAAAAGGCGTTAACTTCTACATGCCTGA- 791
|.|||||||||||.||.||||||||||||||.||||| |||||
BPUM_3056___p 743 CCTTTATGGACCGTGCAAAAGAAAAAGGCGTGAACTT-------CCTGAT 785
BSNT_05133___ 792 ------AGATGTACTCGTTGCAGATGATTTCTCTAACGATGCAAACGTGA 835
||||||.||.||.||.||.||.||.||.||.|||||.|| |..
BPUM_3056___p 786 TCCAACAGATGTTCTGGTAGCCGACGACTTTTCAAATGATGCGAA--TAC 833
BSNT_05133___ 836 AA--ATTGTGCCGATCTCTGAAATCCCTAGTGATTTAGAAGCAATCGACA 883
|| ||||||||.|||||||||||.||.||||||.||||||||.|.||.|
BPUM_3056___p 834 AAGCATTGTGCCAATCTCTGAAATTCCAAGTGATCTAGAAGCACTTGATA 883
BSNT_05133___ 884 TTGGTACGAAAACACGCGAAACGTATGCTGACGTCATCAAAAACAGCAAA 933
||||.||..|.|||.|.||.|.|||||||||.|||||.||||||||||||
BPUM_3056___p 884 TTGGAACAGAGACAAGAGAGAAGTATGCTGATGTCATTAAAAACAGCAAA 933
BSNT_05133___ 934 CTTGTCGTGTGGAACGGACCAATGGGCGTATTCGAAATCGACTTGTTCGC 983
|||||.||.|||||||||||||||||.|||||.|||||||||...|||||
BPUM_3056___p 934 CTTGTTGTTTGGAACGGACCAATGGGTGTATTTGAAATCGACGCATTCGC 983
BSNT_05133___ 984 TCAAGGAACAAAAGCGGTTGCGGAAGCATTGGCAGAGGCGAAAGATACAT 1033
|.|||||||||||||..|.||.||||||.|||||||.||.||||||||||
BPUM_3056___p 984 TAAAGGAACAAAAGCAATCGCAGAAGCACTGGCAGAAGCAAAAGATACAT 1033
BSNT_05133___ 1034 ACTCTGTCATCGGCGGAGGAGACTCTGCGGCAGCGGTTGAAAAATTCGGC 1083
|.||||||||.|||||.|||||.||.||.|||||.|||||.|||||.||.
BPUM_3056___p 1034 ATTCTGTCATTGGCGGTGGAGATTCAGCAGCAGCTGTTGAGAAATTTGGT 1083
BSNT_05133___ 1084 CTTGCTGACAAAATGAGCCACATCTCAACAGGCGGCGGCGCATCCCTTGA 1133
|||||.||..|.||||||||.||.||.||||||||||||||.||.|||||
BPUM_3056___p 1084 CTTGCCGATCAGATGAGCCATATTTCTACAGGCGGCGGCGCTTCACTTGA 1133
BSNT_05133___ 1134 GTTTATGGAAGGCAAAGAGCTTCCAGGGGTAGCTGCACTGAACGATAAAT 1183
.||||||||||||||||||||||||||.||..|||||.|.||||||||||
BPUM_3056___p 1134 ATTTATGGAAGGCAAAGAGCTTCCAGGTGTTACTGCATTAAACGATAAAT 1183
BSNT_05133___ 1184 AA 1185
||
BPUM_3056___p 1184 AA 1185
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