Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05132 and BPUM_3055

See Amino acid alignment / Visit BSNT_05132 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_05132___tpiA.1.24716.seq
#    -bsequence dna-align/BPUM_3055___tpiA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05132___tpiA-BPUM_3055___tpiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05132___tpiA-BPUM_3055___tpiA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05132___tpiA
# 2: BPUM_3055___tpiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity:     636/773 (82.3%)
# Similarity:   636/773 (82.3%)
# Gaps:          22/773 ( 2.8%)
# Score: 2642.5
# 
#
#=======================================

BSNT_05132___      1 ATGAGAAAACCAATTATCGCCGGTAACTGGAAAATGAACAAAACACTCGG     50
                     |||||||||||||||||.||.||.|||||||||||||||||||||||.||
BPUM_3055___t      1 ATGAGAAAACCAATTATAGCTGGGAACTGGAAAATGAACAAAACACTTGG     50

BSNT_05132___     51 CGAAGCTGTCAGCTTCGTTGAAGAAGTGAAATCTTCCATTCCAGCAGCAG    100
                     ||||||.||.|||||||||||||||||.||.||.|||||||||....|.|
BPUM_3055___t     51 CGAAGCGGTTAGCTTCGTTGAAGAAGTCAAGTCATCCATTCCATATCCTG    100

BSNT_05132___    101 ACAAAGCTGAAGCTGTTGTTTGCGCGCCAGCGCTTTTCTTAGAAAAGCT-    149
                     ||||||..|||||..||||.||.||||||||.||||||.|.|||||||| 
BPUM_3055___t    101 ACAAAGTGGAAGCAATTGTCTGTGCGCCAGCCCTTTTCCTTGAAAAGCTC    150

BSNT_05132___    150 ---TGC--TTCTGCTGTGAAAGGCACTGACCTAAAAGTCGGCGCTCAAAA    194
                        .||  ||||      ||.||.||.|||||.|||.|.||.||.|||||
BPUM_3055___t    151 AACAGCCTTTCT------AACGGAACAGACCTTAAAATTGGTGCACAAAA    194

BSNT_05132___    195 CATGCACTTCGAAGAAAGCGGCGCGTTCACAGGCGAAATCAGCCCGGTTG    244
                     |||||||||.|||||||.|||.||.|||||.||.|||||||||||.|.||
BPUM_3055___t    195 CATGCACTTTGAAGAAAACGGTGCATTCACTGGTGAAATCAGCCCTGCTG    244

BSNT_05132___    245 CTCTGAAAGACCTTGGCGTTGACTACTGCGTCATCGGCCACTCTGAGCGC    294
                     |.||.|||||.||||||.|.|.|||||..||.|||||.||.||.||||||
BPUM_3055___t    245 CACTAAAAGATCTTGGCATCGGCTACTCAGTGATCGGTCATTCAGAGCGC    294

BSNT_05132___    295 CGTGAAATGTTCGCTGAAACTGATGAAACAGTTAACAAAAAAGCACATGC    344
                     ||.||..|.||.||||||||.|||||||||||.|||||||||||||||||
BPUM_3055___t    295 CGGGAGTTCTTTGCTGAAACAGATGAAACAGTGAACAAAAAAGCACATGC    344

BSNT_05132___    345 AGCTTTCAAACACGGCATTGTGCCGATCATCTGTGTAGGTGAAACGCTTG    394
                     .||.|||||.||.|||||.||.||.||.||||||||||||||||||||||
BPUM_3055___t    345 TGCATTCAAGCATGGCATCGTTCCAATTATCTGTGTAGGTGAAACGCTTG    394

BSNT_05132___    395 AAGAGCGTGAAGCCGGCAAAACAAATGATCTTGTTGCTGACCAAGTGAAA    444
                     |||||||||||||.||||||||||||||.|||||||||||.||||||||.
BPUM_3055___t    395 AAGAGCGTGAAGCTGGCAAAACAAATGAACTTGTTGCTGATCAAGTGAAG    444

BSNT_05132___    445 AAAGGCCTTGCTGGTCTTTCTGAA--GAACAAGTTGCTGCTTCTGTTATT    492
                     ||||..||.|||||  ||||..||  .|.|||||.||||..||||||||.
BPUM_3055___t    445 AAAGCACTAGCTGG--TTTCACAACTCAGCAAGTCGCTGAATCTGTTATC    492

BSNT_05132___    493 GCGTATGAGCCAATCTGGGCAATCGGAACAGGCAAATCTTCTACAGCGAA    542
                     ||.|||||||||||.|||||.||.||.|||||.|||||||||||||||||
BPUM_3055___t    493 GCATATGAGCCAATTTGGGCTATTGGTACAGGGAAATCTTCTACAGCGAA    542

BSNT_05132___    543 AGATGCGAATGACGTGTGTGCGCATATCCGTAAAACCGTCGCTGAAAGC-    591
                     ||||||.||.|||||.||.||||||||||||.||||.||   ||.|||| 
BPUM_3055___t    543 AGATGCAAACGACGTTTGCGCGCATATCCGTCAAACGGT---TGCAAGCG    589

BSNT_05132___    592 --TTCAGCCAAGAAGCTGCAGACAAGCTTCGCATCCAATATGGCGGAAGC    639
                       |...|.||||||||.|||||||..||||||||.|||||||||||||||
BPUM_3055___t    590 AATATGGTCAAGAAGCGGCAGACAGCCTTCGCATTCAATATGGCGGAAGC    639

BSNT_05132___    640 GTAAAGCCTGCAAACATTAAAGAATATATGGCAGAGTCCGATATTGACGG    689
                     ||.||.|||||.||.||||||||||||||||||||.||||||||||||||
BPUM_3055___t    640 GTGAAACCTGCGAATATTAAAGAATATATGGCAGAATCCGATATTGACGG    689

BSNT_05132___    690 TGCTTTGGTCGGCGGCGCGAGCCTTGAGCCACAGTCATTCGTTCAATTAT    739
                     |||||||||.||||||||.|||.|.||.||.|||||.|||||||||||||
BPUM_3055___t    690 TGCTTTGGTAGGCGGCGCAAGCTTAGAACCTCAGTCTTTCGTTCAATTAT    739

BSNT_05132___    740 TGGAGGAAGGTCAATATGAGTAA    762
                     |||||||||||||||||||||||
BPUM_3055___t    740 TGGAGGAAGGTCAATATGAGTAA    762


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