Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05126 and BPUM_3047
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05126___yvbK.1.24716.seq
# -bsequence dna-align/BPUM_3047___yvbK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05126___yvbK-BPUM_3047___yvbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05126___yvbK-BPUM_3047___yvbK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05126___yvbK
# 2: BPUM_3047___yvbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 508
# Identity: 296/508 (58.3%)
# Similarity: 296/508 (58.3%)
# Gaps: 89/508 (17.5%)
# Score: 717.0
#
#
#=======================================
BSNT_05126___ 1 ---ATGCAACACCTCACCATTCAAAAAGCAACAAACT-TTGATCAACCGC 46
||.|| .|||| .||.|..|.|| .||||.||.|.|
BPUM_3047___y 1 GTGATACA---------GATTC----GGCCATTATCTCATGATGAATCTC 37
BSNT_05126___ 47 T--GTAT-GAGCTTCTGCTGCTCGCCGATCCGTCAAAAGAAATTGTTGAT 93
| ..|| ||.|||.|.||..|.||.|||||.|||||.||||..|||
BPUM_3047___y 38 TCCCAATGGATCTTTTACTATTAGCTGATCCTTCAAAGGAAAAGGTT--- 84
BSNT_05126___ 94 GACT-ACTTGGTCAGAGGAGAATGCTACA--CAGGTT----ATAT----- 131
|| |||| ||| |||| |.|||| .|||
BPUM_3047___y 85 --CTCACTT------------ATG-TACAATCTGGTTCTTGTTATGCCGC 119
BSNT_05126___ 132 -----ATCAGGCGAAT-TAGCTGGTGTATACGTGATCATCACAACT---- 171
||.|.|.|.|| |...||||||.||.||..|.| |||..||
BPUM_3047___y 120 CTTTCATGAAGAGGATGTGATTGGTGTCTATGTACTGA-CACCGCTCTCT 168
BSNT_05126___ 172 -AGGCCACAAACGGTAGAAATCGTTAACATCGCAGTAAAACAAACAATGC 220
|| ||.||.||.||||||.|.||..|.||.|||||..|..||..||
BPUM_3047___y 169 CAG----CATACAGTGGAAATCATGAATGTTGCGGTAAAGGAGTCATGGC 214
BSNT_05126___ 221 AAAAACAGGGCATTGGCAAGCTTCTTATCC-TCGACGCCATTGAAAAAGC 269
||..|.||||.|||||.||||..||.|||| || |.||.||.|...||||
BPUM_3047___y 215 AAGGAAAGGGAATTGGGAAGCAGCTGATCCATC-ATGCGATCGCTGAAGC 263
BSNT_05126___ 270 GAAACACATGGGA--GCAAAGGTGATTGAAATAGGTACTGGAAATTCAAG 317
||||..|...||| .||| |.|||||||||.||.|||||.||.||.||
BPUM_3047___y 264 GAAAGTCGCTGGATTTCAA--GCGATTGAAATTGGCACTGGCAACTCCAG 311
BSNT_05126___ 318 CATCCATCAATTGTCTCTATATCAAAAATGCGGATTTCGCCTTCAAGCGA 367
.||.||.||..|..|.||.|||||||||||.||.|||||..|...|.|.|
BPUM_3047___y 312 TATTCAGCAGCTCGCACTTTATCAAAAATGTGGTTTTCGTATAGCATCCA 361
BSNT_05126___ 368 TCGACCATGATTTTTTTATCAGACACTACGACGAGGAGATTTTTGAAAAC 417
||||.||.|.|||.|||.|.|..|||||.||.||....||||.||||||.
BPUM_3047___y 362 TCGATCACGGTTTCTTTCTGAAGCACTATGATGAACCAATTTATGAAAAT 411
BSNT_05126___ 418 GGCATTCA----ATGCCGTGATATGGTGAGGCTTT-------ATTTGGAT 456
||.||||| ||| ||||||||..||||.| ||||..|.
BPUM_3047___y 412 GGGATTCAGTGTATG----GATATGGTACGGCTGTCGCTCACATTTCAAG 457
BSNT_05126___ 457 C--TCTGA 462
| .||||
BPUM_3047___y 458 CAGACTGA 465
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