Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05116 and BPUM_3042
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05116___opuCB.1.24716.seq
# -bsequence dna-align/BPUM_3042___opuCB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05116___opuCB-BPUM_3042___opuCB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05116___opuCB-BPUM_3042___opuCB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05116___opuCB
# 2: BPUM_3042___opuCB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 667
# Identity: 486/667 (72.9%)
# Similarity: 486/667 (72.9%)
# Gaps: 26/667 ( 3.9%)
# Score: 1692.5
#
#
#=======================================
BSNT_05116___ 1 ATGAATCAAATGAT-GACTTTTTTG-CAAACGAACGGCGGAGAGCTGCTG 48
|||.|||||||.|| ||.|||.|.| .||| ||.||.||.||.||.||
BPUM_3042___o 1 ATGGATCAAATCATCGATTTTCTAGAGAAA--AATGGTGGGGAACTCCT- 47
BSNT_05116___ 49 TATAAAACAG-GAGAGCATTTATATATTTCACTCATAGCCGTTGTATTGG 97
.|.||||..| |.|||||||||||||||||..|.||.||.||.|||.|.|
BPUM_3042___o 48 CACAAAAATGTGGGAGCATTTATATATTTCCTTAATTGCTGTCGTACTAG 97
BSNT_05116___ 98 GCATTATCGTTGCAGTGCCGCTCGGCGTTGCTCTTACCAGAATGAAAAAA 147
|.|||||||||||.||.||..|.|||||.|.|||.||..||||||||..|
BPUM_3042___o 98 GAATTATCGTTGCCGTTCCTTTAGGCGTCGTTCTCACGCGAATGAAACGA 147
BSNT_05116___ 148 GGCGCAGGTGCGGTAATCGGTTTCGTAAACATTGTGCAAACCCTGCCGAG 197
|||||||||...||.||||||.||||.||.||..|.|||||.||.||.||
BPUM_3042___o 148 GGCGCAGGTTTTGTCATCGGTGTCGTGAATATCTTTCAAACACTCCCTAG 197
BSNT_05116___ 198 TCTGGCGATTTTAGCCTTTTTTATTCCGCTTCTCGGCGTAGGAAAAGTGC 247
|.|.||||||.|.||.|||||||||||..||.|.||.||.||.|||.|.|
BPUM_3042___o 198 TTTAGCGATTCTTGCATTTTTTATTCCTATTTTGGGAGTTGGGAAAATAC 247
BSNT_05116___ 248 CTGCGATTGTCGCTTTATTTTTCTATTCGGTGCTGCCGATCCTGCGCAAT 297
||||.||.||.|||.|.|||||||||||.||..||||.||..||.|.|||
BPUM_3042___o 248 CTGCAATCGTTGCTCTCTTTTTCTATTCAGTATTGCCTATTTTGAGAAAT 297
BSNT_05116___ 298 ACGTATACCGGCATTAAAGGTGTAAATAAAAACCTCCTGGAATCGGGGAA 347
||||||.|||||.|..|||||||.||.|||||.|||||.|||||.||.||
BPUM_3042___o 298 ACGTATGCCGGCGTGCAAGGTGTGAACAAAAATCTCCTTGAATCCGGTAA 347
BSNT_05116___ 348 AGGGATTGGCATGACCGGC-TGGGAGCAGATTCGGCTCGTTGAAATCCCG 396
|||.||.||||||| ||.| ||||||||.|||||.||.||.|||.|.|||
BPUM_3042___o 348 AGGAATCGGCATGA-CGACATGGGAGCAAATTCGTCTTGTGGAACTTCCG 396
BSNT_05116___ 397 CTGGCGATTCCCATCATCATGGCGGGGATCCGCACATCAACGATCTATCT 446
||.||..|.||.|||||.|||||.||..||||.||.||||||||.|||.|
BPUM_3042___o 397 CTTGCTGTACCGATCATTATGGCAGGTGTCCGTACGTCAACGATTTATTT 446
BSNT_05116___ 447 AATTGGCTGGGCGACACTTGCGTCGTTTATCGGGGGAGGCGGCCTCGGGG 496
||||||||||.|.||||||||..|.||||||||.||||||||.||.||.|
BPUM_3042___o 447 AATTGGCTGGACAACACTTGCTGCTTTTATCGGTGGAGGCGGTCTTGGTG 496
BSNT_05116___ 497 ACTATATTTTTATCGGACTGAACCTATACCAGCCTGAATATATCATTGGC 546
||||.|||.|.||.|||||..|.|||||.|||||.|||||.||.||||..
BPUM_3042___o 497 ACTACATTCTCATTGGACTTCAGCTATATCAGCCGGAATACATTATTGCA 546
BSNT_05116___ 547 GGTGCCGTGCCTGTCACAATTCTGGCAATTATTATTGA--------TTAT 588
||||||.|.||.||.||.|||.|.||..|.||.||.|| |.||
BPUM_3042___o 547 GGTGCCATCCCAGTTACTATTTTAGCGGTCATCATCGACTTTACCTTGAT 596
BSNT_05116___ 589 G-TGCTGGCTGTGACAGAACGAAAGGTGACGCCGAAAGGCTTGCAAGGGA 637
| .||||| |||| |||.||.||.||..|||||||..||||..
BPUM_3042___o 597 GAAGCTGG-------AGAA--AAAAGTAACACCAGAAGGCTTAAAAGGAT 637
BSNT_05116___ 638 TGAAGGAAGTTTCGTAA 654
|||||||||||||.|||
BPUM_3042___o 638 TGAAGGAAGTTTCATAA 654
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