Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05115 and BPUM_3041
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05115___opuCC.1.24716.seq
# -bsequence dna-align/BPUM_3041___opuCC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05115___opuCC-BPUM_3041___opuCC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05115___opuCC-BPUM_3041___opuCC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05115___opuCC
# 2: BPUM_3041___opuCC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity: 648/960 (67.5%)
# Similarity: 648/960 (67.5%)
# Gaps: 84/960 ( 8.8%)
# Score: 1982.0
#
#
#=======================================
BSNT_05115___ 1 TTGAA-AATGAC-AAAAATCAAATGGCTTGGCGC---GTTTGCTCTCG-- 43
.|||| ||| | |||||..||||||.||.|.|| |.|||| ||
BPUM_3041___o 1 GTGAAGAAT--CGAAAAACAAAATGGATTAGTGCACTGCTTGC---CGGA 45
BSNT_05115___ 44 TCTTTGTCATGCTGCTAGGCGGCTGCTCTCTGCCGGGTCTCGGCGGCGCT 93
|..|||..|| ||.||.|||||||.||.||.||.||.||.|.||||.|.
BPUM_3041___o 46 TGCTTGCTAT--TGATAAGCGGCTGTTCACTTCCTGGACTAGCCGGCTCC 93
BSNT_05115___ 94 TCTGACGACACGATCAAAATCGGG-----GCGCAAAGCATGACAGAATCA 138
||.|.|.|||||.| .|||| ||.||||.|.|.||.||||||
BPUM_3041___o 94 TCAGGCAACACGCT-----GCGGGTGGGAGCACAAAACTTTACCGAATCA 138
BSNT_05115___ 139 GAAATTTTAGCGAATATGATCGCGC-AGCTTATTGAACATGATACAGATT 187
|||||..|.||..|||||.| |.|| |..|.||.||||||.|.||||||.
BPUM_3041___o 139 GAAATCATGGCCTATATGGT-GAGCGATATCATCGAACATTACACAGATA 187
BSNT_05115___ 188 TGAATACCGCTTTAGTGAAAAACCTCGGCTCAAACTA-TGTTCAGCACCA 236
..||.||..|..|.|||||.|||.|.|||||.|| || .||.|||||..|
BPUM_3041___o 188 AAAAGACAACCATTGTGAAGAACTTAGGCTCTAA-TACCGTACAGCAGAA 236
BSNT_05115___ 237 AGCGATGCTGGG----CGGTGACATTGATATTTCAGCCACGCGCTATTCC 282
|||.|| || .||.||.||.||.|||.|.||.||..|.|||.|.
BPUM_3041___o 237 AGCAAT----GGAAAATGGAGATATCGACATTGCTGCGACTAGATATACA 282
BSNT_05115___ 283 GGAACAGATTTAACAAGCACCCTCGGCAAGGAAGCGGAGAAAGATCCGAA 332
||.||||||||.||.||.||.||.||.|.|||.|||||.|||||||||
BPUM_3041___o 283 GGGACAGATTTGACGAGTACGCTTGGAATGGATGCGGAAAAAGATCCG-- 330
BSNT_05115___ 333 AAAAGCG----CTGAACATTGTGCAGAACGAGTTTCAAAAGCGCTTTTCT 378
.|||| .||.|.||.||.||.||.||.|||.|.||.||||.|..|
BPUM_3041___o 331 --GAGCGTGCAATGGAAATCGTTCAAAAAGAATTTAAGAAACGCTATGAT 378
BSNT_05115___ 379 TATAAATGGTTTGATTCCTACGGCTTTGATAACACGTATGCCTTCACCGT 428
||.|||||||||||||||||.|||||||||||.|||||||||||..|.||
BPUM_3041___o 379 TACAAATGGTTTGATTCCTATGGCTTTGATAATACGTATGCCTTTGCAGT 428
BSNT_05115___ 429 AACAAAAAAGTTTGC---GGAAAATGAGCATATTA-ACACCGTGTCCGAC 474
.||..|||||.|.|| |||||| ||..||| |.||.||.||.||.
BPUM_3041___o 429 GACGCAAAAGATGGCGAAGGAAAA----CAAGTTAGAAACGGTCTCTGAT 474
BSNT_05115___ 475 CTGAAAAAAAATGCCTCCCAA----TATAAATTAGGCGTCGACAATGCCT 520
.|||||||.|||| |.|| |||...||.||.|||||.|||...|
BPUM_3041___o 475 TTGAAAAAGAATG----CGAAGAATTATCGGTTCGGTGTCGATAATATTT 520
BSNT_05115___ 521 GGCTGAAACGGAAAGGCGACGGATATAAAGGCTTTGTCAGCACATATGGC 570
||||.|||..||||||||||||.|||.||||.||.||.|..||.||.||.
BPUM_3041___o 521 GGCTCAAAAAGAAAGGCGACGGTTATGAAGGGTTCGTGAAAACTTACGGA 570
BSNT_05115___ 571 TTTGAATTCGGCACAACTTATCCGATGCAGATCGGGCTTGTCTATGACGC 620
.|.|||||.||.|..||.|||||.||||||||.||..|.|||||.||.||
BPUM_3041___o 571 ATAGAATTTGGAAGCACGTATCCAATGCAGATTGGTTTAGTCTACGATGC 620
BSNT_05115___ 621 AGTCAAAAACGGGAAAATGGACGCCGTTTTG-----GCTTATTCAACGGA 665
|.|.|||||.|..|||||||| |.||| ||.||||||||.||
BPUM_3041___o 621 ATTAAAAAATGAAAAAATGGA-----TATTGTGCTTGCCTATTCAACAGA 665
BSNT_05115___ 666 TGGACGGATTAAAGCATACGATCTGAAAATCTTAAAAGACGATAAGCGTT 715
||||||.||.|||||.||.||.||.|||||.||||||||.||||||||.|
BPUM_3041___o 666 TGGACGAATCAAAGCCTATGACCTCAAAATTTTAAAAGATGATAAGCGAT 715
BSNT_05115___ 716 TCTTCCCGCCGTATGACTG-TTCACCGGTGATTCCGGAAAAGGTGCTT-A 763
|.||||||||.||||| || .||.||.||..|.||||||||.|| ||| |
BPUM_3041___o 716 TTTTCCCGCCATATGA-TGCATCCCCAGTTGTCCCGGAAAAAGT-CTTAA 763
BSNT_05115___ 764 AGGAGCATCCGGAGCTTGAGGGTGTGATCAATAAGCTGATTGGGCAAATC 813
|.|||.|.||.|.||||||....||||||||.|..|||||.||..|||||
BPUM_3041___o 764 AAGAGAACCCAGGGCTTGATAAGGTGATCAACAGACTGATCGGAAAAATC 813
BSNT_05115___ 814 GACACGGAAACGATGCAGGAACTTAATTATGAAGTGGATGGCAAGCT--- 860
||.||.|||...|||||.||..|.||.|||.||||.||.||..||||
BPUM_3041___o 814 GATACAGAACAAATGCAAGAGTTGAACTATCAAGTTGACGGAGAGCTTCA 863
BSNT_05115___ 861 -GAAGGAGCCGTCTGTCGTAGCAAAGGAATTTTTAGAGAAA-CATCATTA 908
|||..|||| ..|||.||.|| ||||||...||.||| ||..||||
BPUM_3041___o 864 AGAACCAGCC----ACCGTTGCGAA-GAATTTCCTGAAAAAGCACAATTA 908
BSNT_05115___ 909 TTTTGACTAA 918
.|||||.|||
BPUM_3041___o 909 CTTTGAGTAA 918
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