Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05101 and BPUM_3036
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05101.1.24716.seq
# -bsequence dna-align/BPUM_3036___yvzC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05101-BPUM_3036___yvzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05101-BPUM_3036___yvzC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05101
# 2: BPUM_3036___yvzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity: 139/242 (57.4%)
# Similarity: 139/242 (57.4%)
# Gaps: 64/242 (26.4%)
# Score: 474.0
#
#
#=======================================
BSNT_05101 1 ------------------------------------------------AT 2
||
BPUM_3036___y 1 ATGATGGTCGAAAAGATTCAGATCAGGCGGACTTTTGTCATGCAGTATAT 50
BSNT_05101 3 GGTTAATAACGATTAT-TCCCTTAATCAGCTTGCGCTG--GAAATCGGAG 49
|.|..|.||||| ||| ||..|.|||||||| ||||| |||||.||..
BPUM_3036___y 51 GATCGAAAACGA-TATGTCTTTAAATCAGCT--CGCTGATGAAATTGGCA 97
BSNT_05101 50 TCTCACCCGCCACACTGAGCCGCGTGCTGAATGG-----AGAAAGACGGC 94
||||.||.||||||||.|||.|.||..|.||||| .|||| |
BPUM_3036___y 98 TCTCTCCTGCCACACTTAGCAGGGTATTAAATGGTCACCGGAAA-----C 142
BSNT_05101 95 CGGGGCAGCTTGTGATCGGTAAAATGCTTCACTATTTTAATTTGAAATTT 144
|.||.||.|||||.||.||.||||||.||||.||.|||.||...||||||
BPUM_3036___y 143 CAGGCCAACTTGTCATTGGCAAAATGATTCATTACTTTGATAAAAAATTT 192
BSNT_05101 145 GAGGATCTTTTTTACTATGATTTTATTGACAAAAGTCAATGA 186
||.|||||.|||||||||||....||||||||||||||||.|
BPUM_3036___y 193 GAAGATCTATTTTACTATGAAAACATTGACAAAAGTCAATAA 234
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