Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05089 and BPUM_3030

See Amino acid alignment / Visit BSNT_05089 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:45
# Commandline: needle
#    -asequence dna-align/BSNT_05089___smpB.1.24716.seq
#    -bsequence dna-align/BPUM_3030___smpB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05089___smpB-BPUM_3030___smpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05089___smpB-BPUM_3030___smpB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05089___smpB
# 2: BPUM_3030___smpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity:     368/479 (76.8%)
# Similarity:   368/479 (76.8%)
# Gaps:          16/479 ( 3.3%)
# Score: 1385.5
# 
#
#=======================================

BSNT_05089___      1 ATGCCAAAAGGGTCAGGAAAAG--TATTATCTCAAAATAAGAAAGCCAAT     48
                     ||||| ||||||..|||.||||  |.|| ||.|||||.||.|||||.|||
BPUM_3030___s      1 ATGCC-AAAGGGAGAGGGAAAGGTTGTT-TCCCAAAACAAAAAAGCAAAT     48

BSNT_05089___     49 CACGATTATTTTATAGAAGAAACCTATGAAACAGGCATCGTTCTGCAAGG     98
                     ||.||.|||||||||||||||||.||||||.|.|||.|.||..|.|||||
BPUM_3030___s     49 CATGACTATTTTATAGAAGAAACATATGAAGCTGGCCTTGTGTTACAAGG     98

BSNT_05089___     99 AACCGAAATCAAATCGATTCGCGCCGGCCGCGTAAACCTTAAGGATTCCT    148
                     |||.|||||||||||||||||.||.||....||.||..|.||.|||||||
BPUM_3030___s     99 AACTGAAATCAAATCGATTCGGGCAGGAAAAGTGAATTTAAAAGATTCCT    148

BSNT_05089___    149 TCGCCAAAATCGAACGGGGAGAAGTGTTTCTCCACAATATGCACGTCAGC    198
                     |.|||||||||||.||.||||||||||||||.|||||.||||||||.|||
BPUM_3030___s    149 TTGCCAAAATCGAGCGAGGAGAAGTGTTTCTTCACAACATGCACGTGAGC    198

BSNT_05089___    199 CCATATGAGCAGGGAAACCGCTATAACCATGATCCGCTTCGGACAAGAAA    248
                     |||||.||||||||.||.||.|||||||||||||||||..|.||.|||||
BPUM_3030___s    199 CCATACGAGCAGGGGAATCGTTATAACCATGATCCGCTGAGAACGAGAAA    248

BSNT_05089___    249 GCTGTTAATGCACCGCAAGGAGATTAATAAGC----TGATCGGGTTAACA    294
                     |||..|..|.||.||||||.|    |||.|||    ||||.||...||||
BPUM_3030___s    249 GCTACTGCTTCATCGCAAGCA----AATCAGCAAATTGATTGGTGCAACA    294

BSNT_05089___    295 AAGGAAAAAGGCTATTCTCTCGTTCCGCTGAAGCTGTATTTAAAAAACGG    344
                     ||||||.|||||||.||.|||||.||.|||||.||.|||||.|||||.||
BPUM_3030___s    295 AAGGAAGAAGGCTACTCACTCGTACCTCTGAAACTCTATTTGAAAAATGG    344

BSNT_05089___    345 CTTTGCCAAAGTGCTTCTCGGCCTTGGAAAAGGGAAGAAGAACTATGACA    394
                     .||||||||||||.|..|.||..||||.||||||||.|||||.||.||.|
BPUM_3030___s    345 ATTTGCCAAAGTGTTGATTGGAATTGGGAAAGGGAAAAAGAAATACGATA    394

BSNT_05089___    395 AACGGGAAGATCTGAAGCGCAAGGACGCGAAGCGGGAAATCGAAAGAGCG    444
                     ||||.||||||||||||...||.||.||.||.||.||||||||..|.||.
BPUM_3030___s    395 AACGTGAAGATCTGAAGAAAAAAGATGCAAAACGTGAAATCGAGCGTGCC    444

BSNT_05089___    445 TTCAGAGACAGTCAAAAAGGC--TTCTAA    471
                     |||.|.||..|||||||  ||  |||||.
BPUM_3030___s    445 TTCCGTGATCGTCAAAA--GCAATTCTAG    471


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