Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05089 and BPUM_3030
See
Amino acid alignment /
Visit
BSNT_05089 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_05089___smpB.1.24716.seq
# -bsequence dna-align/BPUM_3030___smpB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05089___smpB-BPUM_3030___smpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05089___smpB-BPUM_3030___smpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05089___smpB
# 2: BPUM_3030___smpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity: 368/479 (76.8%)
# Similarity: 368/479 (76.8%)
# Gaps: 16/479 ( 3.3%)
# Score: 1385.5
#
#
#=======================================
BSNT_05089___ 1 ATGCCAAAAGGGTCAGGAAAAG--TATTATCTCAAAATAAGAAAGCCAAT 48
||||| ||||||..|||.|||| |.|| ||.|||||.||.|||||.|||
BPUM_3030___s 1 ATGCC-AAAGGGAGAGGGAAAGGTTGTT-TCCCAAAACAAAAAAGCAAAT 48
BSNT_05089___ 49 CACGATTATTTTATAGAAGAAACCTATGAAACAGGCATCGTTCTGCAAGG 98
||.||.|||||||||||||||||.||||||.|.|||.|.||..|.|||||
BPUM_3030___s 49 CATGACTATTTTATAGAAGAAACATATGAAGCTGGCCTTGTGTTACAAGG 98
BSNT_05089___ 99 AACCGAAATCAAATCGATTCGCGCCGGCCGCGTAAACCTTAAGGATTCCT 148
|||.|||||||||||||||||.||.||....||.||..|.||.|||||||
BPUM_3030___s 99 AACTGAAATCAAATCGATTCGGGCAGGAAAAGTGAATTTAAAAGATTCCT 148
BSNT_05089___ 149 TCGCCAAAATCGAACGGGGAGAAGTGTTTCTCCACAATATGCACGTCAGC 198
|.|||||||||||.||.||||||||||||||.|||||.||||||||.|||
BPUM_3030___s 149 TTGCCAAAATCGAGCGAGGAGAAGTGTTTCTTCACAACATGCACGTGAGC 198
BSNT_05089___ 199 CCATATGAGCAGGGAAACCGCTATAACCATGATCCGCTTCGGACAAGAAA 248
|||||.||||||||.||.||.|||||||||||||||||..|.||.|||||
BPUM_3030___s 199 CCATACGAGCAGGGGAATCGTTATAACCATGATCCGCTGAGAACGAGAAA 248
BSNT_05089___ 249 GCTGTTAATGCACCGCAAGGAGATTAATAAGC----TGATCGGGTTAACA 294
|||..|..|.||.||||||.| |||.||| ||||.||...||||
BPUM_3030___s 249 GCTACTGCTTCATCGCAAGCA----AATCAGCAAATTGATTGGTGCAACA 294
BSNT_05089___ 295 AAGGAAAAAGGCTATTCTCTCGTTCCGCTGAAGCTGTATTTAAAAAACGG 344
||||||.|||||||.||.|||||.||.|||||.||.|||||.|||||.||
BPUM_3030___s 295 AAGGAAGAAGGCTACTCACTCGTACCTCTGAAACTCTATTTGAAAAATGG 344
BSNT_05089___ 345 CTTTGCCAAAGTGCTTCTCGGCCTTGGAAAAGGGAAGAAGAACTATGACA 394
.||||||||||||.|..|.||..||||.||||||||.|||||.||.||.|
BPUM_3030___s 345 ATTTGCCAAAGTGTTGATTGGAATTGGGAAAGGGAAAAAGAAATACGATA 394
BSNT_05089___ 395 AACGGGAAGATCTGAAGCGCAAGGACGCGAAGCGGGAAATCGAAAGAGCG 444
||||.||||||||||||...||.||.||.||.||.||||||||..|.||.
BPUM_3030___s 395 AACGTGAAGATCTGAAGAAAAAAGATGCAAAACGTGAAATCGAGCGTGCC 444
BSNT_05089___ 445 TTCAGAGACAGTCAAAAAGGC--TTCTAA 471
|||.|.||..||||||| || |||||.
BPUM_3030___s 445 TTCCGTGATCGTCAAAA--GCAATTCTAG 471
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.