Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06233 and BPUM_3024
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_06233___yybP.1.24716.seq
# -bsequence dna-align/BPUM_3024.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06233___yybP-BPUM_3024.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06233___yybP-BPUM_3024.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06233___yybP
# 2: BPUM_3024
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 533
# Identity: 282/533 (52.9%)
# Similarity: 282/533 (52.9%)
# Gaps: 163/533 (30.6%)
# Score: 598.0
#
#
#=======================================
BSNT_06233___ 1 ATGAAGATCAT-TTTGACAG------TACTTGCCGGAGTGGGACTTTTG- 42
||||| |..|| |.|||..| ||.||.||||| ||..|||
BPUM_3024 1 ATGAA-AAAATATGTGATGGCTTTCCTATTTTCCGGA-----ACGCTTGT 44
BSNT_06233___ 43 AGTGCAGGCGGATG---CGGCATGCTTGATCAGGTGAACGA-----CGGA 84
|.| |.||||.|| ||||.|||||||||||||.||||| ||
BPUM_3024 45 ATT--AAGCGGGTGCTCCGGCTTGCTTGATCAGGTCAACGATACAGCG-- 90
BSNT_06233___ 85 TTGAACTATACG--AGTGAAGCAGCTGGTTATGTG---GAGAAGGTGAAG 129
|| |||.| |.|||.|||..||..|||||| ||.| |..||
BPUM_3024 91 ----AC-ATATGTCACTGAGGCAAATGAATATGTGACAGACA---TTCAG 132
BSNT_06233___ 130 ACATTTGCAGAGGAAGCGCCTGAATTGGCTGAGAAAGCTGT---AAATGA 176
..||||.|||||||....||..||.|.|||||..||||||| |||||.
BPUM_3024 133 CAATTTACAGAGGACTTTCCAAAACTTGCTGAAGAAGCTGTGCAAAATGC 182
BSNT_06233___ 177 CACCGAGGCGAAAGAAAAACTTGAAAC---GCAGCTTGAGTCGATTCAGA 223
|.||.| ||||..|.|.|| ||| ||||||.||.|| ||| ||
BPUM_3024 183 CGCCAA----AAAGGCAGAATT--AACCCAGCAGCTAGAATC-ATT--GA 223
BSNT_06233___ 224 AGGCTGCCGCT---GATTTTAATGAATTAACGCCGCCTGATGCCGCAGCG 270
||||.|.|..| ||.|||||||||.|.||..|.|||.|....||||..
BPUM_3024 224 AGGCAGACATTCAAGAATTTAATGAAGTCACAGCACCTAAAATAGCAGAA 273
BSNT_06233___ 271 GAGATTCAT---CAAACCATTCAGGAACATAACGAAACCTTGCAGAAAAG 317
||..|.||| ||.|.|||| |||| ||||
BPUM_3024 274 GACCTGCATGCGCAGATCATT------------GAAA--------AAAA- 302
BSNT_06233___ 318 CGCTGAAGATG-TGTTGAAACAAGCCGAGGAAGGCAAG--GTATCGCTTA 364
|| ||.|| ||| |.||||||....|| |||| |||
BPUM_3024 303 ---TG-AGGTGCTGT---------CAGAGGAAATTCAGACGTAT---TTA 336
BSNT_06233___ 365 AAG-AATTG-GAGCAGTCA-----GACCT---------------GGTCCA 392
.|| ||||| .|||||.|| |||.| ||.|||
BPUM_3024 337 CAGCAATTGAAAGCAGACAACATTGACATTGCTGCGATGCTTGAGGACCA 386
BSNT_06233___ 393 AAACGCA----------AAGCAAATTACTG----------ATGTGATG-- 420
||| |||||..|| |.| ||.|..||
BPUM_3024 387 ----GCAAGGGTTGATCAAGCAGCTT-CAGCAGTCCGTCAATCTATTGCA 431
BSNT_06233___ 421 GGACA------AATTGAGAAGCTGGGTGAATAA 447
||||| ||||.|.||.|| ||
BPUM_3024 432 GGACATTGAACAATTAACAAACT-----AA--- 456
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