Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05004 and BPUM_3023

See Amino acid alignment / Visit BSNT_05004 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_05004___yvgZ.1.24716.seq
#    -bsequence dna-align/BPUM_3023.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05004___yvgZ-BPUM_3023.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05004___yvgZ-BPUM_3023.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05004___yvgZ
# 2: BPUM_3023
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 322
# Identity:     211/322 (65.5%)
# Similarity:   211/322 (65.5%)
# Gaps:          32/322 ( 9.9%)
# Score: 633.0
# 
#
#=======================================

BSNT_05004___      1 ATGGAAAAGCATAAC-GAACAT-----AAAACAT-----TAAACCATAAA     39
                               ||.|| ||||||     ||.||||     |..||| ||.|
BPUM_3023          1 ----------ATGACAGAACATGAAGAAAGACATATGGCTTCACC-TAGA     39

BSNT_05004___     40 AGCTCGAAAGAAAAAGATCAGATT-ACAAACCGGCTTAAGCGGATTGAGG     88
                     ..|..|||.||||||||.|| ||| |..||.|||.|.||.||..|.||.|
BPUM_3023         40 GCCGAGAAGGAAAAAGACCA-ATTGATCAATCGGTTGAAACGAGTGGAAG     88

BSNT_05004___     89 GCCAGGTCAGAGGCATTCAAAACATGGTGGAAAACGACAGATATTGTGTA    138
                     |.||.||..|.||.|||||..|.|||.|.||||||||..|.||.|||.||
BPUM_3023         89 GACAAGTGCGCGGGATTCAGCAAATGATTGAAAACGATCGTTACTGTATA    138

BSNT_05004___    139 GATATTCTTGTG---CAAATTTCAGCTGTTCAGGCGGCAATGAAAAATGT    185
                     ||   |.|||||   |||||.||.|||||..|.|||||..|||||||.||
BPUM_3023        139 GA---TGTTGTGAATCAAATCTCCGCTGTCAATGCGGCTTTGAAAAAGGT    185

BSNT_05004___    186 GGCGCTTCATTTGCTTGAGGATCATGCCCATCATTGTGTAGCAGATGCCA    235
                     ....|||||||||.|.||..|.|||.|.||||||||.|||||||||||.|
BPUM_3023        186 CAGTCTTCATTTGATGGAAAAGCATACACATCATTGCGTAGCAGATGCAA    235

BSNT_05004___    236 TCAAAAGCGGCGACGGGGAACAGGCCATTTCTGAGCTTTTGGAC-GTATT    284
                     ||||.||||||.|.|||||..|.||||||...||| ||...||| ||.||
BPUM_3023        236 TCAAGAGCGGCAATGGGGATGAAGCCATTGAAGAG-TTAATGACGGTCTT    284

BSNT_05004___    285 TAAAAAGTTCACAAAATCATAA    306
                     ||..||..|.||||||||.||.
BPUM_3023        285 TACGAAACTGACAAAATCGTAG    306


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