Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05002 and BPUM_3021
See
Amino acid alignment /
Visit
BSNT_05002 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_05002___yvgX.1.24716.seq
# -bsequence dna-align/BPUM_3021.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05002___yvgX-BPUM_3021.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05002___yvgX-BPUM_3021.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: BPUM_3021
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2633
# Identity: 1641/2633 (62.3%)
# Similarity: 1641/2633 (62.3%)
# Gaps: 415/2633 (15.8%)
# Score: 4733.5
#
#
#=======================================
BSNT_05002___ 1 ATGTTGAGTGAACAAAAGGAAATCGCGATGCAGGTCTCTGGTATGACCTG 50
.||| |.||||||||||...|.||..|..|.||.||||||||
BPUM_3021 1 -------ATGA--AGAAGGAAATCGACTTTCAAATTACGGGGATGACCTG 41
BSNT_05002___ 51 TGCGGCATGTGCTGCCAGAATTGAAAAAGGCCTGAAGCGGATGCCCGGTG 100
|||.||.|||||.|...|.||||||||.||..||||..||.||...||||
BPUM_3021 42 TGCTGCCTGTGCAGGACGCATTGAAAAGGGATTGAACAGGCTGGAAGGTG 91
BSNT_05002___ 101 TCACGGATGCAAATGTTAATCTGGCAACGGAAACATCAAATGTAATCTAC 150
|...||||||.|||||.|||.||||...|||||||||..||||..|.||.
BPUM_3021 92 TGGAGGATGCCAATGTGAATTTGGCGCTGGAAACATCTCATGTTGTGTAT 141
BSNT_05002___ 151 GATCCTGCTGAAACAGGGACT----GCAG-CGAT-TCAAG-AAAAAATAG 193
||..|.| |||| ||| .||| .||| ||||| |||||||..
BPUM_3021 142 GAAGCAG----AACA---ACTCACACCAGATGATCTCAAGAAAAAAATTC 184
BSNT_05002___ 194 AAAAGCTGGGCTATCACGTTGTTACAGAAAAAGCTGAATTCGATATTGAA 243
||...||.|||||..|.||.||.|..||..||||.|||||.|||||.||.
BPUM_3021 185 AATCCCTCGGCTACGATGTGGTGATGGAGCAAGCAGAATTTGATATAGAG 234
BSNT_05002___ 244 GGCATGACCTGTGCGGCTTGCGCCAATCGGATTGAAAAACGGCTTAACAA 293
||.|||||.|||||.||.||.|||||.||.||.||.||| ||
BPUM_3021 235 GGAATGACGTGTGCAGCGTGTGCCAACCGAATCGAGAAA---------AA 275
BSNT_05002___ 294 AAT-----AGAAGGC----GTCGCAAATGCAC----CAGTAAACTTCGCT 330
||| .||.||| ||.| || ||| |.||.|||||.||.
BPUM_3021 276 AATCAATCGGATGGCTGGTGTTG---AT-CACGGATCTGTGAACTTTGCG 321
BSNT_05002___ 331 TTAGAAACAGTTACGGTCGAATACAATCCA----AAAGAAGCGTCT---- 372
.|.||.||..||..||||...||..|.||| ||| |||||
BPUM_3021 322 CTGGAGACCCTTCAGGTCACGTATCACCCAGGGCAAA----CGTCTACAA 367
BSNT_05002___ 373 GTCGGCGATTTGAAAGAAGCGGTAGATAAG---CTTGGATAT-------- 411
|| |||.|.||.|||||||| |.|| .||||.|||
BPUM_3021 368 GT----GATATAAAGGAAGCGGT---TCAGTCCATTGGGTATTCTTTAAT 410
BSNT_05002___ 412 -----AAGCTAAAGTTGAAGGGGGAACAGGACAGTGAGGCTGCTGCTGCT 456
.||||..||.||||| ||| ||..|||
BPUM_3021 411 TGAACCAGCTGTAGATGAAG------CAG---AGGAAGG----------- 440
BSNT_05002___ 457 AAAAAGAAAGAAGAACG---------------GAAGCAAACAGCGAGACT 491
|||||||||..|.|| ||||||.||.|||.|..|
BPUM_3021 441 --AAAGAAAGATCATCGCCAAGCAGCAATAGAGAAGCAGACGGCGCGCTT 488
BSNT_05002___ 492 GATTTTTTCAGCTG-TCCTGTCATTTCCATTGCTTTGGGCGATGGTGAGC 540
..|.|||||| .|| ||||||||.|.||..|.||||||||.|||||.|||
BPUM_3021 489 TCTATTTTCA-ATGATCCTGTCACTGCCGCTTCTTTGGGCAATGGTCAGC 537
BSNT_05002___ 541 CATTTTACATTTACATCATTCATTTGGGTACCCGATATATTTC-TCAATC 589
||||||.|.||.||.||.||.||||||.|.||.|| |...||| |.||||
BPUM_3021 538 CATTTTTCTTTCACGTCTTTTATTTGGCTGCCTGA-AGCGTTCATGAATC 586
BSNT_05002___ 590 CGTGGATGCAATTTGCGCTGGCGACACCAGTCCAATTTCTGATCGGCTGG 639
|.|||.|.||..|.|||.|.||..||||.||.||.||..|..||||||||
BPUM_3021 587 CTTGGGTTCAGCTGGCGTTAGCAGCACCCGTTCAGTTCATTGTCGGCTGG 636
BSNT_05002___ 640 CCGTTTTATGTGGGTGCGTATAAGGCGCTCAGAAATAAAAGCGCCAATAT 689
||.||.|||||.|||||||||||.|||.|..|.||||||||.|||||.||
BPUM_3021 637 CCCTTCTATGTAGGTGCGTATAAAGCGTTACGTAATAAAAGTGCCAACAT 686
BSNT_05002___ 690 GGATGTATTGGTCGCCCTCGGTACGACGGCTGC---TTACGCTTATAGTC 736
||||||..|.|||||.||.||.||..|.||||| ||.| ||||||.
BPUM_3021 687 GGATGTTCTTGTCGCACTTGGGACATCAGCTGCGTTTTTC---TATAGTT 733
BSNT_05002___ 737 TTTATCTTACTTTTCAAAGTCTTGGATC------TCACGGGCATACA-GA 779
|.|| |.||||..||...|| ||| .||||.||| ||
BPUM_3021 734 TATA---------TGAAAGCATTCAGTCAGCGGTTCA-AGGCACACATGA 773
BSNT_05002___ 780 CGG----CCTTTACTATGAAACAAGCGCGATTTTGCTG--------ACGC 817
|| |||.||.||||||||||| ||||| |||.
BPUM_3021 774 -GGCAGCCCTCTATTATGAAACAAG--------TGCTGTACTCATTACGT 814
BSNT_05002___ 818 TGATTTTATTAGGCAAGTTGTTTGAAACAAAAGCAAAAGGCCGTTCCTCG 867
||||..||.|.||.||.||..|.|||.|||.|||||||||..|.||.||.
BPUM_3021 815 TGATCGTACTCGGTAAATTAATGGAAGCAAGAGCAAAAGGGAGATCATCA 864
BSNT_05002___ 868 GATGCGATTAAAAAGCTGATGAAGCTTCAAGCGAAAACAGCGACTGTTGT 917
||.||||||.|||||||||||...||.|||||||||..||||....|||.
BPUM_3021 865 GAAGCGATTCAAAAGCTGATGGGTCTACAAGCGAAAGAAGCGGTCATTGA 914
BSNT_05002___ 918 AAGAGACGGACAGGAGCAAATCATCCCGATCGATGAAGTGCTTGTTAATG 967
..||||.||..|.|||...|.|.|.||.||...|||||||...||.||||
BPUM_3021 915 GCGAGATGGGAAAGAGATGACCGTGCCTATTTCTGAAGTGAAAGTAAATG 964
BSNT_05002___ 968 ACATTGTTTACGTCAAACCCGGCGAACGAA--TTCCTGTCGACGGAGAAG 1015
||.||||.|..||||||||.||.|| ||| |.||.|||||.|||||..
BPUM_3021 965 ACCTTGTGTTTGTCAAACCGGGAGA--GAAAGTACCGGTCGATGGAGAGA 1012
BSNT_05002___ 1016 TGGTTGAAGGCCGTTCAGCGGTTGACGAATCGATGATTACAGGAGAAAGT 1065
|.||.||.|||....|.||..|.||.||.||.|||||.||.||.||||||
BPUM_3021 1013 TCGTGGAGGGCACAACCGCAATCGATGAGTCCATGATAACTGGCGAAAGT 1062
BSNT_05002___ 1066 CTTCCTGTTGACAAAAATCCTGGTGACAGCGTGACAGGTTCAACCGTTAA 1115
.|.||||||||.||||...|||||||....||.|..||..|||||.|.||
BPUM_3021 1063 TTGCCTGTTGATAAAACGGCTGGTGATTCGGTCATCGGGGCAACCATCAA 1112
BSNT_05002___ 1116 CGCAAACGGCTTTCTGAAAATTAAAGCTGTCAACG--TCGGAAAGGATAC 1163
...|||.||.|||.|.|||.|.||||| |.|||.| |.||||| ||.||
BPUM_3021 1113 TAAAAATGGGTTTGTAAAAGTGAAAGC-GACAAAGGTTGGGAAA-GAGAC 1160
BSNT_05002___ 1164 TGCGCTTTCTCATATCATCAAAATTGTTGAGGAAGCACAAGGGTCAAAAG 1213
.||.|||||.||.||.|||..|.|.||.||..|||||||.||.|||||||
BPUM_3021 1161 CGCCCTTTCACAGATTATCCGAGTCGTAGAACAAGCACAGGGCTCAAAAG 1210
BSNT_05002___ 1214 CGCCGATCCAGCGTCTCGCTGACCAGATTTCAGGCATTTTTGTACCCATT 1263
|.|||||.||..|..|.||.||.||.||.|||||.||.||.||.||.||.
BPUM_3021 1211 CACCGATTCAAAGGATGGCCGATCAAATATCAGGTATATTCGTTCCTATC 1260
BSNT_05002___ 1264 GTATTGGGGATTGCCGTTCTCACTTTTCTCATTTGGTACCTTTGGGCGGC 1313
||..|.||.|||||.||.|||||.||.||.||||||| |||
BPUM_3021 1261 GTTGTAGGAATTGCAGTGCTCACCTTCCTGATTTGGT---TTT------- 1300
BSNT_05002___ 1314 TCCTGGCGATTTTGCTG---------AAGCGATCAGCAAG---------- 1344
|| ||||.|| |.|.|| |||| ||
BPUM_3021 1301 TC--------TTTGTTGATCCAGGAAATGTGA-CAGC-AGCCCTTGAAAC 1340
BSNT_05002___ 1345 -TTCATTGCGGTTCTTGTCATTGCCTGTCCTTGCGCCCTCGGTCTTGCCA 1393
||.||.|||||..|.||.||.||.|||||.||.||.|||||.|||||.|
BPUM_3021 1341 CTTTATAGCGGTCATCGTTATCGCATGTCCGTGTGCACTCGGCCTTGCTA 1390
BSNT_05002___ 1394 CTCCGACGAGCATAATGGCTGGATCTGGACGCGCTGCTGAATTCGGGATT 1443
|.||.||....||.|||||||||...||.||.||.|||||||..||.||.
BPUM_3021 1391 CACCAACCTCGATTATGGCTGGAAGCGGCCGTGCCGCTGAATCAGGCATC 1440
BSNT_05002___ 1444 TTATTTAAAGGCGGCGAGCATTTAGAAAAAACAC-ATCGTCTCGATACCA 1492
.|.|||||||||||.||||||||||||...||.| ||| .|||||.||..
BPUM_3021 1441 CTGTTTAAAGGCGGGGAGCATTTAGAAGTGACTCAATC-ACTCGACACGG 1489
BSNT_05002___ 1493 TTGTTCTTGATAAAACCGGAACCGTGACAAACGGGAAGCCGCGTCTGACA 1542
|.||..|.||||||||.|||||.||||||||.|||.|.|||.||||||||
BPUM_3021 1490 TGGTGTTAGATAAAACGGGAACTGTGACAAAAGGGGAACCGAGTCTGACA 1539
BSNT_05002___ 1543 GAT-----GCCATTCCATTCGGCCATTTTGA-AGAAAAAGATTTGCTTCA 1586
||| |.||| || ||.|.||.|| ||||.|.|..||||||||
BPUM_3021 1540 GATGTGCAGGCAT---AT---GCTAATTGGACAGAAGATGCGTTGCTTCA 1583
BSNT_05002___ 1587 ATTTGCAGCGGCAGCGGAAACGGGA-TCAGAGCATCCGCTTGGCGA-AGC 1634
.||.|.||...||||.| |||.|.| ||.||.||.|||||| ||.| |||
BPUM_3021 1584 GTTAGTAGGATCAGCTG-AACAGCAGTCGGAACACCCGCTT-GCTAGAGC 1631
BSNT_05002___ 1635 GATTATTGCTGGCGTGAAAGATAAAGGGCTTGA-------GATACCGAAA 1677
.||.|..|.|||..||||.||..||||.||||| ||.|..|||.
BPUM_3021 1632 CATCACAGATGGAATGAAGGAACAAGGTCTTGAAGTGGTCGAGATTGAAG 1681
BSNT_05002___ 1678 CTT---------ACCC--------GCTTTGAAGCAAAAGTCGGC-GCAGG 1709
|.| |||| |..|||||||||| ||| |||||
BPUM_3021 1682 CCTTCCAAGCGGACCCAGGTCATGGGATTGAAGCAAA----GGCAGCAGG 1727
BSNT_05002___ 1710 ---CA---TTTTGGCTGAAGCCGGAGGAA----AAAGC-ATTCTCGTCGG 1748
|| ||||||.| |||| .|||| |||
BPUM_3021 1728 ACACAAGCTTTTGGTT---------GGAACGCGTAAGCTATT-------- 1760
BSNT_05002___ 1749 CACAAGAAAATTAATGGAGAGC------GAACAGGTTG-AGCATGGGGCT 1791
|| |||||..|.|| |.| ||.||.||.| ||||| .
BPUM_3021 1761 -AC-AGAAACATCAT----ATCCCATATGATCAAGTCGAAGCAT-----C 1799
BSNT_05002___ 1792 CTTCTCGCCCAAATGGAAGAGCTAGAGGCCGAAGGGAAAACAGTTATGCT 1841
|.||.||.| |.||||..||| ||||||||||.|.||||||
BPUM_3021 1800 CGTCACGAC--ACTGGAGCAGC---------AAGGGAAAACGGCTATGCT 1838
BSNT_05002___ 1842 TGTATCCATTGATGGAGAAGCAGCGGGGCTAGTAGCAGTTGCAGATACGA 1891
|||..|.|||||.||.||||..||.||..|.||.||.||.||||||||||
BPUM_3021 1839 TGTCGCAATTGACGGCGAAGTTGCTGGTATTGTTGCGGTCGCAGATACGA 1888
BSNT_05002___ 1892 TTAAGGAT-----ACGTCGCGGAAGGCTGTTGCC-------CGTCTGAAA 1929
|.|| || .||||.| ||| | |||||.|||
BPUM_3021 1889 TCAA--ATCATCCTCGTCTC--AAG--------CAATCAAGCGTCTAAAA 1926
BSNT_05002___ 1930 GAGTTGGGTCTTGATGTCATCATGATGACAGGAG---ACAATCGCAGAAC 1976
|||...||..||.|.|||.|.|||||||||||.| |||| ||.| ||
BPUM_3021 1927 GAGCAAGGGATTCACGTCGTGATGATGACAGGCGATAACAA--GCTG-AC 1973
BSNT_05002___ 1977 CGCAGAAGCCATTGCGAAGGAAGCGGGAATTGCGAATATCATTGCGGAAG 2026
.|||||.||.||||||||..|.|||||.||||...||||||||||.||||
BPUM_3021 1974 AGCAGAGGCGATTGCGAAACAGGCGGGCATTGATCATATCATTGCTGAAG 2023
BSNT_05002___ 2027 TCCTTCCTGAACAAAAAGCGGCGGAAATCGC-CCGCTT--GCAA-----A 2068
||.|.|||||..||||.||.||..|.||.|| .||||| |.|| |
BPUM_3021 2024 TCTTGCCTGAGGAAAAGGCAGCACACATTGCGGCGCTTCAGGAAGAAGGA 2073
BSNT_05002___ 2069 AAGAAGGCCGCCAGACAGCAATGGTAGGCGACGGAATTAACGATGCGCCG 2118
|||||.|.|||| |||||.||.||.||.||.||.|||||.|||
BPUM_3021 2074 AAGAAAGTCGCC--------ATGGTTGGAGATGGCATCAATGATGCACCG 2115
BSNT_05002___ 2119 GCGCTTGCCACAGCTGACATCGGCATGGCGATTGGAACTGGCACGGACAT 2168
||.|||||.|||||..|.||.||.|||||..|.|||||.||.||.||..|
BPUM_3021 2116 GCCCTTGCGACAGCGAATATTGGGATGGCAGTGGGAACAGGGACAGATGT 2165
BSNT_05002___ 2169 TGCCATGGAAACAGCAGACATTACACTGATTCGCGGCGATCTAAACA-GC 2217
.|||||||||.|||||||.||.|||||.||....||.||||| .|| ||
BPUM_3021 2166 CGCCATGGAAGCAGCAGATATCACACTCATGACAGGAGATCT--CCATGC 2213
BSNT_05002___ 2218 -ATTGCAGACGCAATCCGCATGAGTAGATT---------GACAATGAAAA 2257
|||||.| ||.|||.||| ||| .||.||||.||
BPUM_3021 2214 GATTGCGG-----ATGCGCTTGA----ATTTAGTCAAAAAACGATGAGAA 2254
BSNT_05002___ 2258 ACATTAAACAAAA-CTTATTCTGGGCGCTTGGCTATAACAGCCTCGGCAT 2306
|||||||.||||| ||| ||.||||||||||..|||||..|..|.||.||
BPUM_3021 2255 ACATTAAGCAAAATCTT-TTTTGGGCGCTTGCTTATAATTGTATTGGGAT 2303
BSNT_05002___ 2307 CCCAATCGCAGCACTTGGATTTTTAGCACCGTGGATAGCAGGAGCAGCAA 2356
.||.||.||.||..||||..|..|.||.||.|||.|.|||||||||||||
BPUM_3021 2304 ACCGATAGCTGCTTTTGGGCTCCTTGCGCCATGGCTTGCAGGAGCAGCAA 2353
BSNT_05002___ 2357 TGGCATTCAGCTCCGTTTCCGTTGTTCTGAATGCTCTTCGCCTGCA---- 2402
|||||||.||||||||.||||||||..||||.||.||..|..||||
BPUM_3021 2354 TGGCATTTAGCTCCGTGTCCGTTGTATTGAACGCGCTCAGATTGCAGCGA 2403
BSNT_05002___ 2403 ---AA--------------AAGT---AAAATGA 2415
|| |||| |.|||||
BPUM_3021 2404 TTGAAGCCTGTGAGAGAGGAAGTGGCACAATGA 2436
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.