Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04476 and BPUM_3011

See Amino acid alignment / Visit BSNT_04476 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:02
# Commandline: needle
#    -asequence dna-align/BSNT_04476___mntB.1.24716.seq
#    -bsequence dna-align/BPUM_3011___mntB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04476___mntB-BPUM_3011___mntB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04476___mntB-BPUM_3011___mntB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04476___mntB
# 2: BPUM_3011___mntB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     463/858 (54.0%)
# Similarity:   463/858 (54.0%)
# Gaps:         219/858 (25.5%)
# Score: 1039.5
# 
#
#=======================================

BSNT_04476___      1 ATGTTCCC---TGTTGAGCTTGATAATGTGACGGT-----TG---CTTAT     39
                     |||   ||   ||.|    ||.|.||| .|||.||     ||   |.|||
BPUM_3011___m      1 ATG---CCAAATGCT----TTAACAAT-CGACCGTCTTCATGTCTCATAT     42

BSNT_04476___     40 CATAAAAAGCCTGTACTGCAGGACATTTCGC------TGCAGGTGCCTGA     83
                     ||...|.||..||...|..||.|||||||.|      |.|||      ||
BPUM_3011___m     43 CACGGACAGGATGCTTTAGAGAACATTTCTCTTTCCATACAG------GA     86

BSNT_04476___     84 AGGAAAACTTATTGGCATTATCGGCCCAAACGGCGCGGGAAAATCAACCT    133
                     |||||...|.|..||.||.||.||.|||||.||.||.||.||.||.||.|
BPUM_3011___m     87 AGGAACGATGACAGGAATCATAGGTCCAAATGGTGCCGGCAAGTCGACTT    136

BSNT_04476___    134 TGATCAAAACGATTCTCGGTCTT--------GTGCCCAGAGCTTCCGGAG    175
                     |..||||..| ||.||.||..||        ..|.||||       ||||
BPUM_3011___m    137 TACTCAAGGC-ATGCTTGGATTTAATTGAAAAAGACCAG-------GGAG    178

BSNT_04476___    176 ACA-TCTCTATTT---ACGGCAAAGACTATAAGGATCAGCGGACCAG---    218
                     |.| ||.||.|||   ||.||    .||.|||          ||.||   
BPUM_3011___m    179 ATATTCGCTTTTTTGAACAGC----CCTTTAA----------ACAAGTGA    214

BSNT_04476___    219 --AATCGGA-----TATGTTCCGCAGCG--CGGCTCGGTTGACTGGGATT    259
                       ||.|.||     |||||.||.|||.|  ..|.||  |.||||||...|
BPUM_3011___m    215 GAAAACAGATTGCGTATGTACCACAGAGAAATGATC--TAGACTGGACGT    262

BSNT_04476___    260 TCCCCA--CAAGCGCGCTCGATGTCGTCCTAATGGGAAGATA-CGGGAGA    306
                     |.||.|  ||  .|.|||.|||..|||||||.|.||||.||| |.|.||.
BPUM_3011___m    263 TTCCTATTCA--TGTGCTGGATACCGTCCTACTTGGAACATATCCGAAGC    310

BSNT_04476___    307 ATCGGTTTATTAAAGAGGCCAAAGAAAGCGGATGTGGAGATGGCGAAGGC    356
                     .|.|..|.||.|||....|||||.||                  ||||.|
BPUM_3011___m    311 TTGGCCTGATCAAACGTCCCAAAAAA------------------GAAGAC    342

BSNT_04476___    357 CG-------------CA----TTAGCAAAAGTCGGGATGCTTGATTATGC    389
                     ||             ||    ||||.||||||.||.||||..||||.|||
BPUM_3011___m    343 CGGGCTTATGCGTACCACTGTTTAGAAAAAGTGGGCATGCAGGATTTTGC    392

BSNT_04476___    390 GAAGAGGCAAATCAGCCAGCTGTCAGGCGGACAGCAGCAGCGGGTGTTTC    439
                     .||.||.||.||..|..||.|.||.|||||.|||||||||||.||.||.|
BPUM_3011___m    393 TAAAAGACAGATTGGTGAGTTATCCGGCGGTCAGCAGCAGCGTGTCTTCC    442

BSNT_04476___    440 TTGCCCGGGCACTCTGC-CAGAACGCTGACA---TTTATTTTATGGATGA    485
                     ||||..|.||||| ||| ||.||.||  |||   .||.|.|| |||||||
BPUM_3011___m    443 TTGCAAGAGCACT-TGCGCAAAATGC--ACAGCTCTTCTGTT-TGGATGA    488

BSNT_04476___    486 ACCGTTTGCAGG--------TGTCGA-TGCAG---CGACGGAGCGCGCGA    523
                     ||||||||..||        ||.||| ||.||   |||.||..|||   |
BPUM_3011___m    489 ACCGTTTGTTGGGATTGATATGGCGAGTGAAGAAACGATGGTTCGC---A    535

BSNT_04476___    524 TTATGACGCTGTTGGCAGAACTCAAAGAAAAAGGAAAAACCGTGCTTGTC    573
                     ||.|||.|         |||.|...|||..|||||||||||.|..|.||.
BPUM_3011___m    536 TTTTGAAG---------GAATTACGAGATGAAGGAAAAACCATTTTAGTG    576

BSNT_04476___    574 GTCCATCATGACCT--GCAGACCGCCGAGGATTATTTCGATTGGATCTTA    621
                     |||||||||||..|  |.|.|  |||||.|||||.|||      |.|...
BPUM_3011___m    577 GTCCATCATGATTTAAGTAAA--GCCGATGATTACTTC------AGCCAT    618

BSNT_04476___    622 CTGCTTC-ATTTAAGAAAAATCGCTTTC------GGACCGGCGGAAAACG    664
                     ||..||| |||.||.|||||.|.| .||      |||||           
BPUM_3011___m    619 CTCGTTCTATTAAATAAAAAACTC-ATCAAAGCAGGACC-----------    656

BSNT_04476___    665 TGTTTACGATCGAAA----ACCTGCAAAAAACAT-ATGGAGGAA------    703
                     |||..|||||    |    ||.|.||.|...||| .||||||.|      
BPUM_3011___m    657 TGTACACGAT----ATCCTACGTCCAGAGGTCATGCTGGAGGCATATGAA    702

BSNT_04476___    704 ----GGCTTACGTTTTTAAAAGATAAAGTGCTGGCAGAAGGACA----TA    745
                         .|||..|.||.|||||  ||.|       ||||.||||.|    ||
BPUM_3011___m    703 ACGCAGCTACCATTCTTAAA--ATCA-------GCAGGAGGAGACGTGTA    743

BSNT_04476___    746 AGGAGTGA    753
                     |       
BPUM_3011___m    744 A-------    744


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04476 and BPUM_3011

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
