Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04992 and BPUM_3007
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_04992___yvgT.1.24716.seq
# -bsequence dna-align/BPUM_3007.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04992___yvgT-BPUM_3007.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04992___yvgT-BPUM_3007.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04992___yvgT
# 2: BPUM_3007
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 635
# Identity: 434/635 (68.3%)
# Similarity: 434/635 (68.3%)
# Gaps: 46/635 ( 7.2%)
# Score: 1413.0
#
#
#=======================================
BSNT_04992___ 1 ATGGCTTGGGAGCTGCTCAGTGTGATTGGCATCATTGCGTTTGCAGTCAG 50
|||||.|||||..|..|.|||.|.|||||.||.||.||.|||||..|.||
BPUM_3007 1 ATGGCATGGGAAGTCTTAAGTATCATTGGTATTATCGCATTTGCCATTAG 50
BSNT_04992___ 51 CGGCGCAATTGTTGCGATGGAAGAGGAATATGATATTTTAGGAGTTTATA 100
.||.||.||.||.||.|||||.||.||.||.||||||.|.||.||.||.|
BPUM_3007 51 TGGTGCGATAGTAGCAATGGAGGAAGAGTACGATATTCTTGGTGTGTACA 100
BSNT_04992___ 101 TATTAGGGATTGTCACCGCTTTTGGAGGAGGAGCGATCCGCAATTTGCTG 150
|.|||||||||||.||.||||||||.||.||||||||.||.||..|..|.
BPUM_3007 101 TTTTAGGGATTGTAACAGCTTTTGGCGGTGGAGCGATTCGGAACCTATTA 150
BSNT_04992___ 151 ATCGGAGTTCCGGTGTCAGCGCTATGGGAGCAGGGAGCGTACTTTCAA-- 198
||.||..||||||||||.||..|||||...||||| |||
BPUM_3007 151 ATTGGTCTTCCGGTGTCTGCTTTATGGTCACAGGG----------CAAAA 190
BSNT_04992___ 199 --------ATCGCGCTTTTATCTATTACAATTGTGTTTCTGTTTCCGAAG 240
||.||.|||.||||.|||||.|||||||||||.|||||.|||
BPUM_3007 191 TGTTTACCATTGCTCTTGTATCCATTACGATTGTGTTTCTTTTTCCAAAG 240
BSNT_04992___ 241 CTGCTGCTGAAGCATTGGAATAAGTGGGGCAATTTATCAGATGCGATCGG 290
||..||||.|||||.||||..|..|||||.|||||.||.|||||.||.||
BPUM_3007 241 CTTTTGCTCAAGCACTGGAGCACATGGGGGAATTTCTCGGATGCAATTGG 290
BSNT_04992___ 291 CCTCGCTGCCTTTGCTATCCAAGGCGCACTGTATGCTGT-CAAAATGGGC 339
|.|.||.||.|||||.||.|||||.|||.|.|.|||.|| ||||..|.|
BPUM_3007 291 CTTAGCAGCGTTTGCGATTCAAGGTGCATTATTTGCGGTGCAAAGAGAG- 339
BSNT_04992___ 340 CATCCGCTTAGTGCCGTGATCGTGGCTGCGGTGCTGACGGGAAGCGGGGG 389
|.||||||.|||||.||.||.|||||.||..|.|||||.||.|||||.||
BPUM_3007 340 CTTCCGCTCAGTGCGGTCATTGTGGCAGCCATTCTGACTGGGAGCGGTGG 389
BSNT_04992___ 390 CGGAATCATCCGCGACCTTCTT-GCCGGGCGCAAACCGCTTGTGCTGAAG 438
||||||..|.||.|| .||.|| ||.|||||.||.||.||||||||.||.
BPUM_3007 390 CGGAATTGTGCGTGA-TTTATTAGCAGGGCGAAAGCCACTTGTGCTAAAA 438
BSNT_04992___ 439 GCAGAAATTTATGCAGTCTGGGCGGCTCTCGGCGGTTTAATCGTCGG-CT 487
||.||.|||||.|||||||||||.||.||.||.||.|||.||||.|| ||
BPUM_3007 439 GCGGAGATTTACGCAGTCTGGGCAGCACTTGGTGGCTTATTCGTAGGACT 488
BSNT_04992___ 488 TGGGCTGGC---TGGGGAACTCGTTCGGCTTATACGTTCTGTTTTTCGTG 534
.||..|.|| .||.|| |.|.|..||.||..|.||||||.||.|.
BPUM_3007 489 CGGTTTAGCACAAGGAGA----GATTGCTTTGTATTTGCTGTTTCTCATC 534
BSNT_04992___ 535 CTCGTTGTTTGCCGGGTTTGTTCCTATATGTTTAATTGGAAGCTGCCAAA 584
|||||.||.||..||||.||||||||..|.||.||.|||..|||.|
BPUM_3007 535 CTCGTCGTATGTAGGGTGTGTTCCTACCTATTCAAATGGCGGCTTC---- 580
BSNT_04992___ 585 CCG-------TTCTTTTCGCTTAGATAGTCAGTAA 612
||| ||.|||| |||.|||....||||
BPUM_3007 581 CCGCTAGGTCTTATTTT---TTAAATAAAGGGTAA 612
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