Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04986 and BPUM_3006
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_04986___yvgP.1.24716.seq
# -bsequence dna-align/BPUM_3006.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04986___yvgP-BPUM_3006.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04986___yvgP-BPUM_3006.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04986___yvgP
# 2: BPUM_3006
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2194
# Identity: 1370/2194 (62.4%)
# Similarity: 1370/2194 (62.4%)
# Gaps: 359/2194 (16.4%)
# Score: 3929.0
#
#
#=======================================
BSNT_04986___ 1 TTGGACATATTTTTAGTTGTGCTCGTATTATTAACGATTATTGCGAT-TT 49
.||||.||.|||||||..|||||||||.||.|..|..|.||||| || .|
BPUM_3006 1 GTGGAGATTTTTTTAGCAGTGCTCGTACTACTCGCACTCATTGC-ATCAT 49
BSNT_04986___ 50 CTAATATCGTGAACCGGTTTATTCCGTTTATTCCGGTGCCGCTGATTCAA 99
|||||||..|.||.||.|||.|.||.||||||||.||.|||.|.||||||
BPUM_3006 50 CTAATATTATCAATCGTTTTGTCCCCTTTATTCCAGTCCCGTTAATTCAA 99
BSNT_04986___ 100 GT-GGCTCTTGGGATTCTTGCCGCCTCATTTCC-ACAGGGACTT--CATT 145
|| |||| |.||.||.||.|..||..|.||||| .|||| || |||.
BPUM_3006 100 GTGGGCT-TAGGAATACTGGTGGCAGCTTTTCCTTCAGG---TTTGCATA 145
BSNT_04986___ 146 TTGAATTAAACACCGAATTGTTTTTTGTTCTTTTTATCGCGCCTCTGCTA 195
||...|||||..|.|||.|.||.||.|||.|.||.||||||||.|||.||
BPUM_3006 146 TTTCTTTAAATCCTGAACTATTCTTCGTTTTATTCATCGCGCCGCTGTTA 195
BSNT_04986___ 196 TTTAATGATGGAAAGAGGACACCGCGGGCAGAGCTTTGGAATTTAAGGGC 245
||||||||.||.|||.|.||.||..|||..||.||.|||||.|||||.||
BPUM_3006 196 TTTAATGACGGGAAGCGTACCCCAAGGGACGAACTGTGGAAATTAAGAGC 245
BSNT_04986___ 246 TCCGATTTTATTGCTTGCACTCGGCCTTGTATTTGCGACTGTGATTGTAG 295
.||||||.|.|||.|.||.||.||..|.||.||||||||.||.|||||.|
BPUM_3006 246 GCCGATTCTTTTGTTAGCCCTAGGATTGGTCTTTGCGACAGTCATTGTCG 295
BSNT_04986___ 296 GCGGCTACACGATTCACTGGATGATTCC-TGCTATTCCGCTGGCAGCGGC 344
..||.||.||.||.||.||||||||.|| .|| ||||||||..||||.||
BPUM_3006 296 CGGGATATACCATCCATTGGATGATCCCAAGC-ATTCCGCTTCCAGCCGC 344
BSNT_04986___ 345 CTTTGGACTTGCGGCCATTCTTTCACCGACAGATGTCGTCGCTGTCAGCG 394
.||||..||.||.||.|||.|.||||||||||||||.||.||.|||||.|
BPUM_3006 345 ATTTGCGCTAGCAGCGATTTTATCACCGACAGATGTGGTAGCAGTCAGTG 394
BSNT_04986___ 395 CATTATCAGGAAGAGTGAAAATGCCAAAAGGGATTCTTCGCCTGCTGGAA 444
|..|.||..|..|.|||||.||||||||.||.||..|..|.||..|||||
BPUM_3006 395 CTCTTTCCAGCCGTGTGAATATGCCAAAGGGCATCATGAGACTTTTGGAA 444
BSNT_04986___ 445 GGTGAGGGGCTGATGAATGACGCATCAGGTCTGGTGGCCTTTAAGTTTGC 494
||.||.||..|||||||.||.||||||||.||.||.||||||||.|||||
BPUM_3006 445 GGCGAAGGATTGATGAACGATGCATCAGGACTTGTCGCCTTTAAATTTGC 494
BSNT_04986___ 495 GATTGCAGCGGCAGTGACTGGTGCATTTTCATTAGCACAAGCGGCTGTCA 544
.|||||.||..||||||||||.||.||||||.|.||..|.||..|..|.|
BPUM_3006 495 CATTGCTGCAACAGTGACTGGCGCTTTTTCAATCGCTGAGGCATCCTTTA 544
BSNT_04986___ 545 GCTTTGTCTTTATTTCTCTCGGAGG------CTTG-CTGTGCGGGGTTGT 587
||||||||.|.|||.| ||.||| .||| || ||..||.|
BPUM_3006 545 GCTTTGTCCTAATTGC---CGCAGGTGGTCTATTGACT----GGATTTAT 587
BSNT_04986___ 588 CATTTCATTTTTGATTATTCGTTTTCGCCTA-TTTCTGCGCCGCCTTGGC 636
..|.||.|||||.||.||||||||||| ||| |||||.|||||..|.||.
BPUM_3006 588 TCTATCCTTTTTTATCATTCGTTTTCG-CTATTTTCTCCGCCGTTTAGGA 636
BSNT_04986___ 637 ATGCAGGATGTCACGATGCATATGCTGATTCAAATTCTGACGCCGTTTGT 686
|||.|.||||||||||||||.||..|..|.|||||.||.||.||.|||||
BPUM_3006 637 ATGGACGATGTCACGATGCACATCATCCTGCAAATCCTTACACCATTTGT 686
BSNT_04986___ 687 GATTTATTTGGGAGCTGAAGAAATCGGCGTTTCCGGCATTTTAGCTGTTG 736
.||.|||||.|..|||||||||||.||.||.||||||||||||||.||||
BPUM_3006 687 CATCTATTTAGCCGCTGAAGAAATTGGTGTATCCGGCATTTTAGCCGTTG 736
BSNT_04986___ 737 TGGCTGGCGGTATTACCCATGCGGTTGAACAGGATCGTCTGGAATCAACG 786
|.|||||||||.|.||.||.||..||||.||||||||..||||..|||
BPUM_3006 737 TTGCTGGCGGTGTGACACACGCTATTGAGCAGGATCGAATGGAGGCAA-- 784
BSNT_04986___ 787 ATGAT-----CAAGCTGCAAATCGTCTCCTCAAGTACGTGGAACATTATT 831
|| |||.||.|||||.|..||.||||..||.|||||.||||||
BPUM_3006 785 ---ATTTAGCCAAACTACAAATTGCTTCATCAAACACATGGAATATTATT 831
BSNT_04986___ 832 TTATTTATTTTGAACGGCCTGGTCTTCGTTATTCTCGGCACGCAAATTCC 881
|||||||||||.||.||.||.||.|||||||||||.||...|||.|||||
BPUM_3006 832 TTATTTATTTTAAATGGACTTGTTTTCGTTATTCTTGGATTGCAGATTCC 881
BSNT_04986___ 882 TGATGTTATTTCTGTTATCTTTAACGACACTGCCAT----CAG------- 920
||||| ||.||||| |.||| |||
BPUM_3006 882 TGATG----------------TATCGACA--GTCATTTTCCAGGATGAAG 913
BSNT_04986___ 921 -------CAACATGAAGGTGATCGGCTATATCCTAGTCATCACATTTACG 963
.||.|||.||||.|||...||.|||.||.||| |||||
BPUM_3006 914 CGTTTAATAATATGCAGGTCATCACTTACATCTTAATCA------TTACG 957
BSNT_04986___ 964 -------TTAATGCTCCTGAGATTCCTGTGGGTGCTGTTCTTCTGGAACG 1006
|| |||.|.||.||.|||.|.|||||...|.||||||||...|
BPUM_3006 958 CTGTGTCTT-ATGATTCTAAGGTTCTTATGGGTATGGCTCTTCTGGGCAG 1006
BSNT_04986___ 1007 GCAAATGGTTCTTTAATAAAGATCAGAACATCTATAAACCGGGTCTTCGT 1056
|.||||||..|...|..|||.|.||.|||.|..|.||||||...|||||.
BPUM_3006 1007 GGAAATGGAGCGCAACGAAAAAGCAAAACGTGAAAAAACCGAAACTTCGC 1056
BSNT_04986___ 1057 TCGACGCTGTTAATTTCGATT-TCCGGTGTGCGTGGAGCAGTAACGCTTG 1105
.|..||.||.|.||..| ||| ||.|||||.||.||.||.||.||..|.|
BPUM_3006 1057 GCCTCGATGCTCATGAC-ATTCTCTGGTGTACGCGGGGCCGTGACATTAG 1105
BSNT_04986___ 1106 CAGGTTCTTTTTCCATTCCGTATTT--CCTGGAGGACGGTACGCCGTTTC 1153
|.|||.|.||.|||||.|| |||| .||.|.||||||..|.|||||||
BPUM_3006 1106 CCGGTGCCTTCTCCATCCC--ATTTACACTTGCGGACGGATCACCGTTTC 1153
BSNT_04986___ 1154 CGGAAAGAAATCTGATTCTCTTTTTAGCAGCCGGCGTCATTTTATGCACG 1203
|.|||.||.||.|||||.|.||..|.|||||.||||||||||||||.||.
BPUM_3006 1154 CTGAACGACATTTGATTATTTTCCTCGCAGCAGGCGTCATTTTATGTACA 1203
BSNT_04986___ 1204 CTTGTCATT---GCTACCGTTGTGCTGCCGATTCTGACTGAAAAAGAAGA 1250
| ||||| ||||..||..|.|||||..||||..|.||.|||.||||
BPUM_3006 1204 C---TCATTTTAGCTAGTGTGCTACTGCCTCTTCTATCCGAGAAAAAAGA 1250
BSNT_04986___ 1251 AGAGGACGAGGAACGAAACAAGAAGCTGCTGACG---------------- 1284
.||||| ||.| ||||.||
BPUM_3006 1251 --------------CAAACA--AATC-GCTGTCGATTTGGATACAAAAAT 1283
BSNT_04986___ 1285 -------GCGAGACGTAAATTGATCAAAACAGCCCTTCAAACGATTAA-A 1326
||||.|||.||..||.|.|.||..|||.||.||||| |||| |
BPUM_3006 1284 TCAGCATGCGAAACGGAAGCTGCTGAGAAGTGCCATTAAAACG-TTAAGA 1332
BSNT_04986___ 1327 G-AGGACATGAATG-AGACAAACA---AAACGGCCTCTCTTGCGGTGATA 1371
| |||| ||||||| |||| |||| || |..||||||||..|.||
BPUM_3006 1333 GAAGGA-ATGAATGAAGAC-AACAGGGAA---GTGTCTCTTGCACTCAT- 1376
BSNT_04986___ 1372 GCTGAATACAATGAGAA---AATGAAAAATCTTCG---TTTTCAGCAGT- 1414
||||||..| |||| ||.||.|| |.|.|||| ||
BPUM_3006 1377 --------CAATGATTACCGAATG---AAGCTGCGTAATATCCAGC-GTG 1414
BSNT_04986___ 1415 ATACATCATCTAATCGCATTAAGAAGCACGAGCGAAAA--GTCCGTGC-G 1461
|..||| |||.|.|.|...|.||||| ||.||.||||| .||.| || .
BPUM_3006 1415 AGCCAT-ATCAATTTGGGATGAGAAG-ACAAGAGAAAAAGATCAG-GCTA 1461
BSNT_04986___ 1462 CAGGGGGTTAAGGCTGAGCAAGAGGCGCTGATGAAAATGCTGGAGCGGGG 1511
||.||..||||.||.||||| |||||| |||..|
BPUM_3006 1462 CACGGAATTAAAGCGGAGCA---------GATGAA---GCTCCA------ 1493
BSNT_04986___ 1512 AGACATCCC-----GGAAGA-----------AAC----AGCAAATGTGCT 1541
|||.|.| |||||| ||| |||..|||.|||
BPUM_3006 1494 --ACAACTCATTGAGGAAGAGAAAATCGATCAACAAGAAGCCTATGAGCT 1541
BSNT_04986___ 1542 GCAAGAACGATTTAACGAGTTGGAAATTTTGTATGCGAACCCGTTTAAAG 1591
|||||||.||||..|.|||.|.|||||..||||..|.|||.|.||.|||.
BPUM_3006 1542 GCAAGAAAGATTCCATGAGCTCGAAATGCTGTACTCAAACTCCTTCAAAA 1591
BSNT_04986___ 1592 TCGGATTATCAAAA-----------AC----------AAGGCTCAA---- 1616
|..||||.|||||| || |.|||||.|
BPUM_3006 1592 TTCGATTTTCAAAAGTGAAGTTTCTACGCTTGCTTCAATGGCTCCAATTA 1641
BSNT_04986___ 1617 --GAGGCTGATGTATTGGAT--TTTCTTCGGTGAACATAAAAAGCCGGAG 1662
|.|||.|| ||..|.| |||| |.|||
BPUM_3006 1642 TGGCGGCCGA---ATCAGCTCGTTTC--CAGTG----------------- 1669
BSNT_04986___ 1663 ATGTCGATTTTAAATGAAGCG-GGATTGATACGGGCAACAAGA---GT-- 1706
|| ||||||.| ||.|| |||.|..||| .||||| | ||
BPUM_3006 1670 --GT--ATTTTAGA--AAACGAGGACTCGTAC---AAACAA-ATCCGTAA 1709
BSNT_04986___ 1707 GAAAACGGCAAAAGCAGCGATAGAATATCTGGAAAAA----CATAAGACG 1752
||||||||||.|.||.||..|.|| ||.||..|| ||||.||..
BPUM_3006 1710 GAAAACGGCAGAGGCTGCTGTTGA----CTCGATCAAGCAGCATATGAAC 1755
BSNT_04986___ 1753 GAAGAACATAAAGAA--GTGTTTTTATC-TGTCATTTCGTTCTATAAAC- 1798
||.|||.|||||.|| ||| |.||| .||.|||...||.||.||.|
BPUM_3006 1756 GATGAAAATAAACAAACGTG---TCATCAAGTGATTGGCTTTTACAACCA 1802
BSNT_04986___ 1799 AGTTAATTTTCAGGCTG-GAGCACAGCCATCATGAGCT--------GAAA 1839
|||.|.||.|| |||| ||.|||.||| || |||| .|||
BPUM_3006 1803 AGTCATTTATC--GCTGTGAACACGGCC--CA--AGCTTCTTTCAGCAAA 1846
BSNT_04986___ 1840 TCAAG--CGCCCATTTTGAAAATCAGAAGCTGGAAGTAA----AGCTGA- 1882
||| ||..||||| || |.|||||.|| ||||.|
BPUM_3006 1847 --AAGATCGTTCATTT---------GA--CCGGAAGAAAAAAGAGCTTAA 1883
BSNT_04986___ 1883 -----AGGCTGTGCAGGCGATCAGAAATGAAATTCAAACGCTCTTCGAAG 1927
|.|||||.|||.||||..|||||||||||||||||.|.|..|||.
BPUM_3006 1884 CTTCCAAGCTGTACAGACGATTCGAAATGAAATTCAAACGTTGTATGAAA 1933
BSNT_04986___ 1928 AGAGGGAAATTTCCCGGGACATTTCCCATGAGCTTCGCCAATACATTAAT 1977
|..|.|||||....||.||.|||.|||||.|.||..|..|.||.||.|||
BPUM_3006 1934 ATGGTGAAATCAATCGTGATATTGCCCATCATCTAAGGGAGTATATCAAT 1983
BSNT_04986___ 1978 GATGTCGAAGCCGCCATG----CTTGAAGGCGGCGAATAA---- 2013
|||.|.||||| || ||||| |.||||.
BPUM_3006 1984 GATATGGAAGC-----TGTTCTCTTGA------CCAATACGTAA 2016
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