Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01010 and BPUM_3005
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01010___ydhR.1.24716.seq
# -bsequence dna-align/BPUM_3005.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01010___ydhR-BPUM_3005.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01010___ydhR-BPUM_3005.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01010___ydhR
# 2: BPUM_3005
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1006
# Identity: 558/1006 (55.5%)
# Similarity: 558/1006 (55.5%)
# Gaps: 242/1006 (24.1%)
# Score: 1388.0
#
#
#=======================================
BSNT_01010___ 1 ATG------CTTGGCGGTATTGAAGCAGGCGGCACAAAGGTTATTTGTGC 44
||| ..|||.|..||||||||.|||||.||||||.||..||||||
BPUM_3005 1 ATGGCGTATTATGGAGCAATTGAAGCTGGCGGTACAAAGTTTTGTTGTGC 50
BSNT_01010___ 45 TGTCGGTAAAGAAGAT-GGAACAATCATTGACCGAATAGA--ATTCCCTA 91
..||||.||.||..|| ||.|.|.|| |.|..|||..|| ||| ||||
BPUM_3005 51 AATCGGCAATGAGCATGGGGATATTC--TCAAAGAAATGACGATT-CCTA 97
BSNT_01010___ 92 CAAAGATGCCGGATGAAACGATAGAGAAAG-TGATTCAATATTTTCG-CC 139
||.||...||.||..||||..||.| |||| |.||.|.|| |||||| .|
BPUM_3005 98 CAGAGCACCCAGAAAAAACATTACA-AAAGCTCATCCCAT-TTTTCGAGC 145
BSNT_01010___ 140 AATTTTCATTAC----AGGCGATCGGCATCGGCTCCTTTGGCCCCGTTGA 185
| .|||.|| |.||..|.||..|||||||||||||
BPUM_3005 146 A----GCATGACATTGAAGCATTAGGGGTCGGCTCCTTTGG--------- 182
BSNT_01010___ 186 TAACGATAAAACCAGT---CAAA------------CATACGGTACCATTA 220
|.|||| |.|| |||| |.||||||...||.|
BPUM_3005 183 -ACCGAT-----CTGTGTCCAAAAGGACGACCCTTCTTACGGTTATATCA 226
BSNT_01010___ 221 TGGCCACGCCGAAAGCGGGCTGGAGACACTACCCCTT-TTTGCAAACTGT 269
||..|||||||||||..|..||||..||.||.||.|| .|..||.| |.
BPUM_3005 227 TGAACACGCCGAAAGTAGAGTGGAAGCATTATCCGTTCATCCCAGA--GC 274
BSNT_01010___ 270 TA-AGAACGAAATGAAAATTCCAGTCGGATTTAGTACAGATGTCAACGCT 318
|| ||||..||.|.|||.|.|||||....||||..|||||||||||.||.
BPUM_3005 275 TAGAGAAACAATTAAAAGTCCCAGTATCTTTTACAACAGATGTCAATGCG 324
BSNT_01010___ 319 GCGGCGCTGGGTGAATTCCTTTTC----GGTGAAGCGAAGGGTCTCGACA 364
||.||..|.|||||| ||..| ||.|.|||.||.||.||..|.|
BPUM_3005 325 GCAGCCTTAGGTGAA----TTAACAAAAGGAGCAGCCAAAGGGCTGAATA 370
BSNT_01010___ 365 GCTGCCTGTATATAACGATTGGTACTGGCATCGGTGCGGGCGCAATTGTA 414
||||..|||||||.|||.|.|||||.||.||||||||.|||||..|||||
BPUM_3005 371 GCTGTATGTATATCACGGTCGGTACGGGTATCGGTGCAGGCGCTGTTGTA 420
BSNT_01010___ 415 GGGGGCAGGCTCCTTCAGGGGCTGTCGCACCCAGAGATGGGCCATATTTA 464
.....|...||.|||||.||.|..|||||.|||||||||||.||.||...
BPUM_3005 421 AAAAACGAACTTCTTCACGGACATTCGCATCCAGAGATGGGACACATCCT 470
BSNT_01010___ 465 TATCCGGAGGCACCCGGATGACGCATAC------CAAGGGAAG--TGTCC 506
|.|| ||||| |.||||..||.|| .|||| || ||.||
BPUM_3005 471 TGTC---AGGCA---GCATGAATCAGACGTTTTTGAAGG--AGTTTGCCC 512
BSNT_01010___ 507 TTATCATGGAGA-TTGCTTTGAAGGCTTGGCTTCCGGTCCCGCCATTGAA 555
....||||| || .|||||.|||||..||||..|.||.||.||.||||||
BPUM_3005 513 AGCGCATGG-GACATGCTTAGAAGGACTGGCAGCTGGACCAGCGATTGAA 561
BSNT_01010___ 556 GCGCGCTGGGGAAAA------AAAG------CCGCGGATTTATCAGGTAT 593
....|.|||||.||| |||| |.|.|||
BPUM_3005 562 AAAAGATGGGGGAAATCTGCGAAAGAACTGACAGAGGA------------ 599
BSNT_01010___ 594 AGCACAAGTCTGGGAACTGGAAGGGTACTATATTGCCCA----------- 632
||.|..|||.||||.|||.||||...|.|||.|.||.||
BPUM_3005 600 AGAATCAGTTTGGGCACTTGAAGCCGATTATTTGGCGCAGGCGCTAATGC 649
BSNT_01010___ 633 AGCACTGGCTCAGTATATTTTGATCCTTGCAC-CTAAAAAAATCATTCTT 681
||.|||.|||| |||||.|.||..|.|| | ||||||.|.
BPUM_3005 650 AGTACTCGCTC-----ATTTTAAGCCCAGAACGC-------ATCATTATG 687
BSNT_01010___ 682 GGCGGCGGCGTCATGCAACAGAAACAAGTGTTTTC-TTATATCTATCAAT 730
|||||.|||||||||.||||.|||||..|||||.| |||..||.|
BPUM_3005 688 GGCGGGGGCGTCATGAAACAAAAACAGCTGTTTCCATTAATTCGA----- 732
BSNT_01010___ 731 ATGTACCGAAAATCATGAACAACTACTTAGATTTTTCTGAATTGTCAGAT 780
||.||.|.|| ||.|||| |||.||| |||
BPUM_3005 733 -------GAGAAGCTTG-----CTGCTTA------TCTCAAT-----GAT 759
BSNT_01010___ 781 GATATAAG-------------TGAT---TATATTGTACCTCC---ACGTT 811
.||.| || |||| ||.|||||..|||| || ||
BPUM_3005 760 TATGT-AGACCTGCCGCCGCTTGATTCATACATTGTCTCTCCTGGAC-TT 807
BSNT_01010___ 812 TAGGCAGTAACGCCGGAATCATCGGCACGCTAGTT----TTAGCGCATC- 856
.||| .|||.|||||.||.|..|| .||| || ||||| ||||
BPUM_3005 808 GAGG--ATAAGGCCGGCATGACAGG--TGCT--TTGCTGTTAGC-CATCG 850
BSNT_01010___ 857 ------------AGGCCTTACAAGCAGAGGCAGCATCCGGGGAGGTGCGA 894
|.||||.|
BPUM_3005 851 AAGCGAAGAAAAACGCCTGA------------------------------ 870
BSNT_01010___ 895 TCATGA 900
BPUM_3005 870 ------ 870
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