Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04979 and BPUM_3003
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_04979.1.24716.seq
# -bsequence dna-align/BPUM_3003.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04979-BPUM_3003.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04979-BPUM_3003.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04979
# 2: BPUM_3003
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 714
# Identity: 463/714 (64.8%)
# Similarity: 463/714 (64.8%)
# Gaps: 81/714 (11.3%)
# Score: 1404.5
#
#
#=======================================
BSNT_04979 1 ATGGCTTTACTG-CCGAGTAGCATAAGCGCTTCAGAATTTTTCACACCCG 49
|||.||.|.||| |.|| |||.|||.|..|||||.
BPUM_3003 1 ATGCCTATGCTGACTGA----------------AGACTTTCTATCACCCA 34
BSNT_04979 50 TTGCGCTTTCCTTTCAGGTGGCGGCAGTTGCCGGAATTGTT-GTCATTAT 98
||..|||.|||.||||.||||||...|||..||| |.|||| |.||.|.|
BPUM_3003 35 TTTGGCTGTCCATTCAAGTGGCGATCGTTAGCGG-ACTGTTGGCCACTGT 83
BSNT_04979 99 TCTCGGAACA--------CTTGCTGGAGCATGGATGTCACGGGCATCATT 140
|.|.||.||| ||| .||||||.|.||..||.|.||
BPUM_3003 84 TTTTGGCACAACGATTGGCTT--------TTGGATGGCGCGAACAACTTT 125
BSNT_04979 141 TTTCGGAAAAACGGCACTCGAAACATGTTTTATGCTTCCGCTCGTTCTTC 190
|...||.||||.|....|.|||||...|.|.|||.|.||.||||||||.|
BPUM_3003 126 TAAAGGGAAAATGCTTGTGGAAACGCTTCTGATGATGCCACTCGTTCTCC 175
BSNT_04979 191 CGCCTACTGTTGTCGGTTTTATTTTGATCGTCATTTTCGGAAAGCACAGC 240
|.||.||.||.||.||.|||.|.|||.|||||.|.||||||||.||.|||
BPUM_3003 176 CACCAACAGTCGTTGGCTTTTTATTGCTCGTCGTATTCGGAAAACATAGC 225
BSNT_04979 241 TTCATCGGACAAGCCATCGAGTGGATTTTCCAGCAGCCTGTCATTTTCAC 290
||.||.||....||.||.||.|||||.|||||.|||||.|||||||||||
BPUM_3003 226 TTAATAGGGGGCGCGATTGAATGGATCTTCCATCAGCCGGTCATTTTCAC 275
BSNT_04979 291 CTGGTGGGCCGCTGTGATCGCCTCGGCTGTTGTAGCCTTTCCGCTTATGT 340
.||||||||.||.||.|||||.|||.|.||.||.||.||||||||.||||
BPUM_3003 276 ATGGTGGGCGGCGGTCATCGCTTCGACAGTCGTCGCATTTCCGCTCATGT 325
BSNT_04979 341 ATCAATCAGCCAAAACCGGATTTGCTGAC-ATTGATCCCGATATACAAGG 389
||||||||||.||..|.||.|||.|| || |||||..|.|||||..||||
BPUM_3003 326 ATCAATCAGCAAAGGCGGGCTTTTCT-ACAATTGAGTCAGATATTGAAGG 374
BSNT_04979 390 TGCGGCAATGGTAGACGGCGCTAGCA--GATGGAAAGTGTTTATCCATAT 437
.||.||||..|||||.||.||| || .||...||||.|||..|.||||
BPUM_3003 375 GGCTGCAAAAGTAGATGGTGCT--CATTCATTCCAAGTCTTTGCCTATAT 422
BSNT_04979 438 CTCCGTCCCGCTTGC----CTATCCTTCGTTACTGACCGGAAGCATCCTC 483
..|.||.||.||||| |.||||.|| .||.|.||.||||||||.
BPUM_3003 423 TACTGTACCTCTTGCCCTGCCATCCCTC----TTGTCTGGCAGCATCCTT 468
BSNT_04979 484 AGCCTTGCGCGGGCGCTCGGAGAATTTGGCGCAACACTCATGTTTGCAGG 533
|||.||||..|.||.||.||||||||.||.||.||..|.||||||||.||
BPUM_3003 469 AGCTTTGCAAGAGCCCTTGGAGAATTCGGAGCGACCTTAATGTTTGCTGG 518
BSNT_04979 534 AAACATCCCCGGTGTTACGCAAACACTGCCGACGGCGATATATGTCGC-A 582
.|||||.||.||....||.||||||||.||.||.||.||.|||||.|| |
BPUM_3003 519 CAACATTCCAGGAAAAACCCAAACACTCCCAACCGCTATCTATGTGGCGA 568
BSNT_04979 583 TTGGATTCCGGCAACAATAC-------CCTTGCTTGGGCGTGGGTCGTCT 625
|| |||||.|| || .|||||||||||.|||....|||
BPUM_3003 569 TT-GATTCTGG-------ACGCATGGAGCTTGCTTGGGCCTGGACAATCT 610
BSNT_04979 626 GTATTGTAGTCATTTCCTTTTTGATGCTGTTT-----TTCATTCAACAGA 670
||||.||..||.|.||.|||.|.||||| ||| |.|.| |||
BPUM_3003 611 GTATCGTGATCTTATCTTTTATAATGCT-TTTGGCTGTGCGT-----AGA 654
BSNT_04979 671 AAAAAACGCACTAA 684
||.||| |||
BPUM_3003 655 AATAAA-----TAA 663
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