Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04948 and BPUM_2989
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_04948.1.24716.seq
# -bsequence dna-align/BPUM_2989.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04948-BPUM_2989.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04948-BPUM_2989.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04948
# 2: BPUM_2989
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity: 485/804 (60.3%)
# Similarity: 485/804 (60.3%)
# Gaps: 138/804 (17.2%)
# Score: 1422.5
#
#
#=======================================
BSNT_04948 1 ATGAAAAAAACAGTGACAGAAAGGAACATAAAAGTGGAAAATGCGTCAAT 50
|||||||..||...|||
BPUM_2989 1 ---------------------------------GTGGAAACAGCAAAAAT 17
BSNT_04948 51 TTTAATCGTAGACGATGAGAAAGCGATTGTGGACATGATCAAACGCGTTC 100
.||.||.|.|||.||.||..||||.|||||..|.|||.|..|||||||..
BPUM_2989 18 ATTGATTGCAGATGACGAAGAAGCAATTGTCAAAATGGTTGAACGCGTAT 67
BSNT_04948 101 TCGAAAAAGAAGGTT------ATCGAAATATACTGGATGCAGCAAGC--- 141
|..||||||||||.| || |.||||| ||||
BPUM_2989 68 TAAAAAAAGAAGGATTCAAGCAT--ATATATA-----------AAGCTTA 104
BSNT_04948 142 ----GCAGAAGAAGC----GATTCCCGTTGTGAAGGCCAATAAGGTTGA- 182
|||||.||||| ||| ||||| |||.||.|..||
BPUM_2989 105 CCATGCAGATGAAGCATTAGAT----GTTGT------CAAAAACGAGGAC 144
BSNT_04948 183 --------CTTGATTGTGCTGGATGTCATGATGGGCGGAATGTCCGGTTT 224
|||..|| ||.|||||.||||||...||.|.|||.|||||
BPUM_2989 145 ATCCATCTCTTACTT---CTAGATGTGATGATGCCGGGTAAGTCTGGTTT 191
BSNT_04948 225 TGAAG-----CCTGCACACTTATCAGAGAGTATTCAGACGCTCCGATTTT 269
|||.| ||||.| ||.|||.|.|.|.|..|.||.||.|||||
BPUM_2989 192 TGATGTTCTTCCTGAA-----ATGAGAAAATTTACGAAAGCACCCATTTT 236
BSNT_04948 270 TTTCCTGACGGCAAGATCATCCGACGCGGACAAATTATCGGGCTTTGCGG 319
.|...|.||.||||||.|.||.||.|..||.|||.|..|.||.|||||..
BPUM_2989 237 CTATTTAACTGCAAGAACGTCTGATGTAGATAAACTGACCGGTTTTGCTC 286
BSNT_04948 320 TTGGAGCTGATGACTATATCACAAAACCATTTAATCCGCTGGAATTAGCG 369
..||.||.|||||.||.||||||||.||||||||||||||.||..|.|.|
BPUM_2989 287 AAGGGGCAGATGATTACATCACAAAGCCATTTAATCCGCTAGAGCTTGTG 336
BSNT_04948 370 GCGCGGATCAGAGCGCATCTCAAGCGTACATATCAATC----GAAAGAAA 415
||..|.||.|..||.||..|.||.||.|||||| ||| .||||.||
BPUM_2989 337 GCTAGAATTAAGGCTCACTTAAACCGAACATAT--ATCTCTTTAAAGGAA 384
BSNT_04948 416 CGAGTTCAAA--------TCAAA---CCTACACATATG---ATTACTTTA 451
|| |.|| ||||| |.|||..||||| |||.||
BPUM_2989 385 -GA---CCAAGATGAGGCTCAAAGTCCATACGAATATGCCCATTTCT--- 427
BSNT_04948 452 CTTTTTCTCCGCAAAATGCCGAGTTGATCGTAGGCGGGGAAGCCGTTGCC 501
|||.|..|||.||....||.||.||||..|||.|.||.||.|....|||.
BPUM_2989 428 CTTATCATCCTCATTCAGCTGAATTGAAAGTAAGAGGAGAGGTGACTGCA 477
BSNT_04948 502 TGTTCAGCCCAGCT--TCTGCAGCTTT--TGCAGTATTTTTGTGAACACC 547
||.||.||.||||| ||| |||| ||.||||.||||||||.||.|
BPUM_2989 478 TGCTCTGCTCAGCTACTCT----CTTTACTGAAGTACTTTTGTGATCATC 523
BSNT_04948 548 CTAACGTGGTGCTTTCCAAAGATCAAATATATGAAAAAGTATGGGGCTAT 597
|.||.|||||.||.||.|||||.|||||.|||||.||||||||||||..|
BPUM_2989 524 CGAATGTGGTTCTCTCAAAAGACCAAATCTATGAGAAAGTATGGGGCGTT 573
BSNT_04948 598 CCTTCCTACGGTGACAACAACACCGTCATGGTTCATATTCGCAAGCTTAG 647
||.||.||.|||||.|||||||||||.|||||.||||||||.|||||.||
BPUM_2989 574 CCATCATATGGTGATAACAACACCGTGATGGTACATATTCGAAAGCTGAG 623
BSNT_04948 648 GGAGAAGATTGAGCGCGATCCGAGCAATCCGGAGTATATTGTAACCGTTC 697
.||.|||||.|||...|||||.||..|.||.||.||||||||.||..|.|
BPUM_2989 624 AGAAAAGATCGAGTTAGATCCAAGTCAGCCCGAATATATTGTGACGATCC 673
BSNT_04948 698 GAGGTCTCGGCTATCGTTTTATCCCAAATCCTGAAGGCAAGCGGTCATGA 747
|.||..|.||.|||...|||||.|||.|.|| ||..||| |.||||.|
BPUM_2989 674 GTGGAATGGGATATAAATTTATACCACACCC---AGTAAAG-GTTCATCA 719
BSNT_04948 747 ---- 747
BPUM_2989 720 ATAA 723
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