Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02087 and BPUM_2987
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02087___uxaC.1.24716.seq
# -bsequence dna-align/BPUM_2987___uxaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02087___uxaC-BPUM_2987___uxaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02087___uxaC-BPUM_2987___uxaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02087___uxaC
# 2: BPUM_2987___uxaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1578
# Identity: 982/1578 (62.2%)
# Similarity: 982/1578 (62.2%)
# Gaps: 279/1578 (17.7%)
# Score: 2908.5
#
#
#=======================================
BSNT_02087___ 1 ATGAAAGACGGTGAGGACATGGAACCCTT----CATGGGCGAAAACTTTT 46
|||.||.|||| .|||.|| |.||||
BPUM_2987___u 1 ------------------ATGAAAGCCTTTTTAAATGAGC----AGTTTT 28
BSNT_02087___ 47 TATTGAAAAATGAAACCGCTG-TCAGTCTCTATCACAATTATGCGAAAGA 95
||.|.||.|.|..|||.||.| ..||| |.|||||..|.|.|||.||.||
BPUM_2987___u 29 TACTAAACAGTCCAACGGCGGAAAAGT-TATATCATGAGTTTGCAAAGGA 77
BSNT_02087___ 96 CATGCCAATTATTGATTACCACTGCCACTTAAGTCCGAAAGAAATCTATG 145
|.|.|||||.||.||||||||.|||||.||||||||.|||||.|||||||
BPUM_2987___u 78 CCTTCCAATCATAGATTACCATTGCCATTTAAGTCCTAAAGACATCTATG 127
BSNT_02087___ 146 AAAATAGTACATTTCAAAACATCACGGAAGCCTGGTTGTATGGTGACCAT 195
||||||..||.||.|.|||.|||||.||.||.|||.|.|||||.||.|||
BPUM_2987___u 128 AAAATAAAACCTTCCGAAATATCACTGAGGCATGGCTTTATGGAGATCAT 177
BSNT_02087___ 196 TATAAATGGCGCATCATGAGAGCCAATGGAATTGAGGAGACATACATCAC 245
||.|||||||||..|||||||||.|||||.|||...||.||..|..||||
BPUM_2987___u 178 TACAAATGGCGCGCCATGAGAGCAAATGGCATTCCCGAAACGCATGTCAC 227
BSNT_02087___ 246 CGGAGATGCGCCTGATGAGGAGAAATTTATGGCTTGGGCGAAAACCGTGC 295
.||.|||||..|||||.|.||.||||||.||||.||||||||.|||||.|
BPUM_2987___u 228 GGGTGATGCATCTGATTATGATAAATTTTTGGCGTGGGCGAAGACCGTCC 277
BSNT_02087___ 296 CGATGGCGATTGGCAATCCGCTCTACAACTGGACTCACTTAGAATTGCAG 345
|.|||.|.||.||.|||||||||||..|.||||||||..||||
BPUM_2987___u 278 CTATGACCATAGGAAATCCGCTCTATCATTGGACTCATCTAGA------- 320
BSNT_02087___ 346 CGTTTTTTTGGCATTTATGAG-----ATTTTAAACGAGAAGTCCGGGCCG 390
|| |||| |||| .|||||||..|.|
BPUM_2987___u 321 ----------GC-----TGAGAAGGTATTT------CGAAGTCCAAGAC- 348
BSNT_02087___ 391 GCTAT---ATGGAAA-----CGGACA-----------------AATGAAC 415
|||| |||.||| |.|||| ||||||.
BPUM_2987___u 349 -CTATTAAATGAAAAAAATGCAGACACCATTTGGCAGAAAGTCAATGAAA 397
BSNT_02087___ 416 TGCTCAAAGGGGAAGGCTTCGGGGCAAGGGATTTAATCGTGAAATCAAA- 464
.|||..|||..||.||.||.||.||.||.||.||.|||.||||||||||
BPUM_2987___u 398 AGCTGCAAGAAGAGGGATTTGGAGCGAGAGACTTCATCATGAAATCAAAC 447
BSNT_02087___ 465 --TGTAAAGGTCGTGTGTACAACAGATGACCCTGTTGATTCTCTTGAATA 512
||.||..||.||| |||||||||||.||..|.|||||.|||.||||
BPUM_2987___u 448 GTTGAAACTGTTGTG---ACAACAGATGATCCAATCGATTCACTTCAATA 494
BSNT_02087___ 513 CCATCTATTATTAAGAGAAGACAAAGACTTTC-CTGT-CAGCGTGCTGCC 560
.||||.|..|.|..|.|||| ||...||| |||| || .|||||.||
BPUM_2987___u 495 TCATCAAAAACTGCGGGAAG----AGGGATTCTCTGTACA-AGTGCTTCC 539
BSNT_02087___ 561 TGGATTTCGGCCGGATAAAGGACTTGAGATCAATCGTGAAGGCTTTCCTG 610
.||.|||||.||.|||||||.|||.|| .||.|.|||.|.| |||
BPUM_2987___u 540 AGGGTTTCGACCTGATAAAGCACTCGA----TATAGCGAATGAT---CTG 582
BSNT_02087___ 611 -------AGTGGGTGCAGGCGCTTGAAGATGCCGCCGCCATATCGATTAC 653
|.|..||.||.|.|||.|.|||.||..|.||.||.|| |.|||
BPUM_2987___u 583 TTTGAAAAATATGTTCATGAGCTGGCAGAGGCTTCAGCTATTTC-AATAC 631
BSNT_02087___ 654 AA-CCTATGATGAGTTTTTAAAGGCGTTGGAAAAACGAGTGCGA------ 696
|| ||||..|.||.||||||||.||..| .||.|.|.||
BPUM_2987___u 632 AATCCTACCAAGATTTTTTAAATGCTCT------CCGCGCGAGAATTGAT 675
BSNT_02087___ 697 TTCTTCCACTCAGC-CGGCGGC-AGAGTTTCTGATCACGCGATAGATTCA 744
||.||||| |.|.| ||||.|| .|| |.||.|||||.||.||..||..|
BPUM_2987___u 676 TTTTTCCA-TGAACACGGCTGCTTGA-TCTCAGATCATGCTATTAATGAA 723
BSNT_02087___ 745 ATGGTATTTGCCGAAACAACAAAAGAAGAAGCTGGACGGA--TTTTTTCT 792
|||..||.||..|||||.|||.||||||||| |||| || .|.||||
BPUM_2987___u 724 ATGACATATGAAGAAACGACACAAGAAGAAG-TGGA--GACCATCTTTC- 769
BSNT_02087___ 793 GACAGATTACAAGGAACAGA------GGTT-TC---TGA-GGAAGCTGAG 831
|| ||.||| |||| || ||| .|||...|||
BPUM_2987___u 770 -----AT-------AAAAGAATGTCTGGTTATCCATTGACAGAAAAAGAG 807
BSNT_02087___ 832 AAG---AAATTTAAGACATATACGCTTCAGTTTC--TTTGC--GGT---- 870
||| ||||||||.|||.|.|| |||| |.||| |||
BPUM_2987___u 808 AAGATCAAATTTAAAACAGAGAC-------TTTCATTATGCTAGGTCAGG 850
BSNT_02087___ 871 ----TTGTATGCGGAGCTCGATTGGGCGATGCAGTTTCATATCAACGCTT 916
.||| ||||..|..|||||.||||||.||||||||||.||..
BPUM_2987___u 851 CTTACTGT-----GAGCGTGGCTGGGCAATGCAGCTTCATATCAATGCAC 895
BSNT_02087___ 917 TAAGAAACACGAATACAAAAATGATGAAAAGGCTCGGACCTGATACAGGC 966
|.|||||||..|||||.||||||.|..|.|||||.||.||.|||||.||.
BPUM_2987___u 896 TTAGAAACAATAATACGAAAATGTTTGAGAGGCTTGGGCCAGATACGGGG 945
BSNT_02087___ 967 TATGATTCTATGAACGATGAAGAAATTGCTAAGCC---TT----TATACA 1009
||.|||.|.|||||.||.|||||.|||||.||||| || ||||..
BPUM_2987___u 946 TACGATGCGATGAATGACGAAGATATTGCAAAGCCGCTTTGCCGTATATT 995
BSNT_02087___ 1010 AGCTTCTGAACTCAGTTGAG---ATGAAGAACCAGCTGCCGAAAACGATT 1056
||.| .|||.|| |.|||||..|| |||||.||.||||||
BPUM_2987___u 996 AGAT---------CGTTTAGAACAAGAAGATGCA-CTGCCAAACACGATT 1035
BSNT_02087___ 1057 TTATATTCACTGAATCCAAACGATAACTATGTCATCGCCAGCATGATCAA 1106
.|.|||||..|.|||||||..| ||.|||||.| .|| |||||
BPUM_2987___u 1036 CTGTATTCCTTAAATCCAAGAG---ACAATGTCGT------GAT-ATCAA 1075
BSNT_02087___ 1107 C----------AGTTTTCAGGACGGTATTACCCCGGGAAAAATACAATTC 1146
| ||.|||||.|||||.|..||.|||||.||.||.||...|
BPUM_2987___u 1076 CATTGGCTGGAAGCTTTCAAGACGGGAAGACACCGGGGAAGATGCAGCAC 1125
BSNT_02087___ 1147 GGCACAGCCTGGTGGTTTAACGATACTAAAGACGGAATGCTCGACCAAAT 1196
||||||||||||||||||||.|||||.||..|.||||||...||.||.||
BPUM_2987___u 1126 GGCACAGCCTGGTGGTTTAATGATACGAAGCAAGGAATGACAGAGCAGAT 1175
BSNT_02087___ 1197 GAAAGCGTTATCAAATGTTGGCCTTTTCAGCCGTTTTATCGGCATGCTCA 1246
||...|..|.||.|.|.|.||.||..||||||||||||||||.|||||.|
BPUM_2987___u 1176 GATGACTCTTTCCAGTATCGGACTGATCAGCCGTTTTATCGGGATGCTGA 1225
BSNT_02087___ 1247 CCGATTCCAGAAGCTTTCTTTCGTATACGCGCCACGAATATTTCAGGCGG 1296
|.|||||..||||.|||.|.||.|||||..|.||.||||||||| ||.
BPUM_2987___u 1226 CAGATTCACGAAGTTTTTTATCCTATACAAGGCATGAATATTTC---CGA 1272
BSNT_02087___ 1297 ATCGTCTGCAATTTG-------ATTGGAGAATGGGTGGAAAACGGCGAAG 1339
| |.|||| |||| ||.||.||.|||||.|||||.||.||||
BPUM_2987___u 1273 A--GACTGC--TTTGTGATATCATCGGGGATTGGGTAGAAAAAGGAGAAG 1318
BSNT_02087___ 1340 TGCCGCGCGATATG-----GAGCT-TCTGGGAAGCATCGTTCAGGGGATT 1383
|.|| .|||| ||||| |..|||.|| |||||..|.||.||.
BPUM_2987___u 1319 TCCC-----CTATGACCTAGAGCTGTTAGGGGAG-ATCGTGAAAGGAATC 1362
BSNT_02087___ 1384 TGCTATGACAATGCGAAACACTACTTTCAATTT---CAAGAAGAGAA--- 1427
.|.|||||.|||||.||.||.||.||||||||| |.||.|.||.|
BPUM_2987___u 1363 AGTTATGAAAATGCCAAGCAATATTTTCAATTTGACCGAGTAAAGCAGCT 1412
BSNT_02087___ 1428 -----AGCAAACGTGTAA---------- 1440
|.|||| ||||
BPUM_2987___u 1413 CCATCATCAAA---GTAAAATCACATGA 1437
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