Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02099 and BPUM_2984
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02099___uxaA.1.24716.seq
# -bsequence dna-align/BPUM_2984___uxaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02099___uxaA-BPUM_2984___uxaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02099___uxaA-BPUM_2984___uxaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02099___uxaA
# 2: BPUM_2984___uxaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1617
# Identity: 1032/1617 (63.8%)
# Similarity: 1032/1617 (63.8%)
# Gaps: 246/1617 (15.2%)
# Score: 2968.5
#
#
#=======================================
BSNT_02099___ 1 TTGAAGTCGTTTATAAAGATTCATAAGC----AAGATAATATCCTTCTTG 46
.||||....|||||...|||||| | .|||||||.||..|.|||
BPUM_2984___u 1 ATGAAAGATTTTATTGTGATTCA----CCCTTCAGATAATGTCGGTATTG 46
BSNT_02099___ 47 CTCTGCGGGATATCCAAAAG-----------GGAGAGAGGCTGCATGCGG 85
||.| ||||| ||.|||..|||||||
BPUM_2984___u 47 CTTT-----------AAAAGTACTTGAACAAGGGGAGGAGCTGCAT---- 81
BSNT_02099___ 86 ACGGCGTGTCGAT--TGAAGTAAAGAATGATATAAAA------------A 121
|.|...||| ||..|| ||.|.||||| |
BPUM_2984___u 82 ----CATCAAGATCATGCCGT------TGTTTTAAAAGAAACCATCGCCA 121
BSNT_02099___ 122 GAGGCCATAAGATTGCATTGCAGT--CTATCAA--AGAAAACGACAGCAT 167
.|||.||||||.|||||||| || .|||||| |||.| ||.|..||
BPUM_2984___u 122 AAGGTCATAAGTTTGCATTG--GTTGATATCAAGCAGAGA--GAGAATAT 167
BSNT_02099___ 168 CATCAAGTACGGGTTTCCAATCGGTCATGCATCACAA----GATATCTCG 213
|||.||.|||||.|..||.|||||.||.||| ||.| .||.||| |
BPUM_2984___u 168 CATGAAATACGGTTACCCCATCGGGCACGCA--ACGACTGCCATTTCT-G 214
BSNT_02099___ 214 ATCGGAGA------GCATATTCATGTCCATAATACGAAAACAAACCTGTC 257
.| ||||| ||||| || |||||.|..|||||.||.||
BPUM_2984___u 215 CT-GGAGAATGGGTGCATA--CA----CATAACATTAAAACCAATCT--- 254
BSNT_02099___ 258 TGATATCCAATCA-TACAGCT---------ATACACCGAG-----ATTT- 291
|||| .|.|||| ||| |||| ||||
BPUM_2984___u 255 ---------ATCAGGAAAGCTTAATTATGAATA---CGAGCCTTCATTTA 292
BSNT_02099___ 292 ----GA-------TGAAAATCCGTATTCTAATGAGAACCGGACGTTTAAA 330
|| ||||||..| |||.|..||.||||||
BPUM_2984___u 293 CAAAGAACCCCTGTGAAAAAAC------------GAATCTTACTTTTAAA 330
BSNT_02099___ 331 GGTTTTAGAAG-AGAAAACGGAGATGCGG---GTG---TACGGAATGAAT 373
|| .||.||| .||||| |||.|| ||| ||||.|||||..
BPUM_2984___u 331 GG--ATATAAGCGGAAAA-----ATGGGGAAAGTGGGATACGCAATGAGC 373
BSNT_02099___ 374 TGTGGATTGTCCCAACTGTCGGCTGTGTCAATGGAATAGCAGAAAAAATG 423
|.|||||.||||||||.||.||.||.||.|||||.||.||.||..||||.
BPUM_2984___u 374 TTTGGATAGTCCCAACCGTTGGATGCGTAAATGGCATCGCCGATCAAATT 423
BSNT_02099___ 424 CTGCAGCGTTTTGTCAG-AGAAACAG--GGGA-TATCGCTCCATTTGATA 469
.|.|| ..|.||..|.| .||||..| |||| .|||..|||.||||| |
BPUM_2984___u 424 ATCCA-AATATTCACTGCTGAAATGGGCGGGAGCATCCATCCGTTTGA-A 471
BSNT_02099___ 470 AC-GTACTGGTGTTAAAGCATCAA-TACGGATGCTCGCAGCTTGGCGATG 517
|| |..||.||.|||||||| ||| |||||||||||.||||||||.||.|
BPUM_2984___u 472 ACAGCTCTTGTATTAAAGCA-CAATTACGGATGCTCACAGCTTGGAGACG 520
BSNT_02099___ 518 ATCACGAAAATACGAAGCAA--ATCCTGCTGAATGCCATTCGCCATCCAA 565
||||.||||||||.|| || ||..|.|..||||||.|....|||||.|
BPUM_2984___u 521 ATCATGAAAATACAAA--AACCATTTTACAAAATGCCGTGAAGCATCCCA 568
BSNT_02099___ 566 ATGCCGGCGGCGT-CTTGGTGTTAGGGCTTGGCTGTGAAAACAATGAGC- 613
||||.||.||||| ||| ||..|.||.||.||.||||||||.||.|| |
BPUM_2984___u 569 ATGCTGGAGGCGTGCTT-GTCCTCGGACTGGGTTGTGAAAATAACGA-CA 616
BSNT_02099___ 614 -TGGCAAGAATGAAGGAAGCA--CTGCAAGATGTGA-----ACCTGGAGC 655
||| |||.| ..|| ||.||..|.|||| |||..|||.
BPUM_2984___u 617 TTGG--AGATT------TTCAGTCTACATTAGGTGAATATGACCATGAGA 658
BSNT_02099___ 656 GGGTGAAGTTTCT-GGAATCC---CAGTCGGTGACCGACGAAATGGAGGC 701
|.|||||||||.| .|||.|| .|||.|| .||.||.||.|||.|
BPUM_2984___u 659 GAGTGAAGTTTTTAAGAAGCCAAGAAGTAGG----AGATGAGATTGAGAC 704
BSNT_02099___ 702 AGGTGTTGCTTTGCTGAAGGAAATTCATGAAGCGGCCAAAGGAGATAAGA 751
.||.||.|||||.||.||.||||||.||||.||.||.||||..|||.|..
BPUM_2984___u 705 GGGAGTCGCTTTACTCAAAGAAATTTATGAGGCAGCGAAAGAGGATCACC 754
BSNT_02099___ 752 GAGAAGACATTCCGCTGTCTGAACTGAAGATCGGGCTGAAATGCGGAGGT 801
|.|||||.||.|||.|.|||||.|||||.|||||..||||.|||||.||.
BPUM_2984___u 755 GTGAAGAAATCCCGTTATCTGAGCTGAAAATCGGCTTGAAGTGCGGGGGA 804
BSNT_02099___ 802 TCGGACGGTTTTTCCGGCATAACCGCAAACCCGCTGCTTGGACGTTTTTC 851
||.||.||.||.|||||.||.||||||||.|||||..|.|||.|..|.||
BPUM_2984___u 805 TCAGATGGATTCTCCGGTATTACCGCAAATCCGCTTTTAGGAAGGCTGTC 854
BSNT_02099___ 852 AGATTATCTCATTGCACAGGGAGGGAGCACGGTGCTGACGGAAGTACCGG 901
.||||.|.|..||||.||.||.||.|..||.|||.|.||.|||||.||.|
BPUM_2984___u 855 CGATTTTATTGTTGCTCAAGGCGGTACGACAGTGTTAACAGAAGTGCCAG 904
BSNT_02099___ 902 AAATGTTCGGCGCAGAAACCATCCTGATGCAGCGGGCTGCCAATGAAGAA 951
|||||||.||.||||||||.||..|||||.|..|.||.| ||| .||||
BPUM_2984___u 905 AAATGTTTGGAGCAGAAACGATTTTGATGGAAAGAGCAG--AAT-CAGAA 951
BSNT_02099___ 952 GTG--TTTC-ATAAGATAGTCGATTTAATCAATGATTTCAAACAATACTT 998
|.| |||| |.||.||.||..|..|.||||||||.||.|||||||||||
BPUM_2984___u 952 GCGACTTTCGACAATATTGTGCAAATGATCAATGACTTTAAACAATACTT 1001
BSNT_02099___ 999 TATTAAACAT-GATCAGCCGGTGTACGAAAATCCCTCACCGGGCAACAAA 1047
.||..|.||| || |||||.||.||.||||||||.||.|||||.||.|||
BPUM_2984___u 1002 CATGGATCATCGA-CAGCCAGTATATGAAAATCCTTCCCCGGGAAATAAA 1050
BSNT_02099___ 1048 GCGGGCGGCATTTCTACACTTGAGGATAAATCGCTGGGCTGTACGCAAAA 1097
||.||.||.|||||.|||.|.||.||||||||..|.||.|||||.|||||
BPUM_2984___u 1051 GCAGGGGGAATTTCGACATTAGAAGATAAATCTTTCGGATGTACACAAAA 1100
BSNT_02099___ 1098 AGCGGGGATTTCT--CCTGTCACGGATGTCTTGAAATACGGGGAAGTGCT 1145
|||.||||.|||| |.| ||| .|||||.||||||||.||||||.||||
BPUM_2984___u 1101 AGCAGGGACTTCTGACAT-TCA-AGATGTATTGAAATATGGGGAATTGCT 1148
BSNT_02099___ 1146 CAAGACAAGAGGG-CTGACGCTTTTGAGCGCGCCAGGCAATGATTTGATC 1194
.||| |.|.|||| ||.|...|.||.||.||||||||.|||||||||.|.
BPUM_2984___u 1149 AAAG-CGAAAGGGTCTAAATTTATTAAGTGCGCCAGGAAATGATTTGGTT 1197
BSNT_02099___ 1195 GCCTCCTCCGCATTGGCGGCGGCCGGCTGCCAAATTGTCCTCTTTACAAC 1244
||.||.||.||..|.||.||..|.|||||.||..|.||.||.||||||||
BPUM_2984___u 1198 GCTTCATCTGCTCTTGCCGCTTCTGGCTGTCAGTTGGTTCTTTTTACAAC 1247
BSNT_02099___ 1245 GGGGAGAGGCACGCCGTTTGGCAGCTTTGTCCCGACGGTGAAAGTAGCGA 1294
.||.|||||.||.||.||.||||..||||||||.||..|||||||..|||
BPUM_2984___u 1248 AGGCAGAGGGACACCATTCGGCACGTTTGTCCCAACAATGAAAGTCTCGA 1297
BSNT_02099___ 1295 CAAACACCGAGC--TGTATGAAGCGAAGCCGCATTGGATTGATTTTAACG 1342
|.||.|| ||| |.||||||.|.||....|||||||||||.|||||.|
BPUM_2984___u 1298 CGAATAC--AGCCTTATATGAAACAAAAAAACATTGGATTGACTTTAATG 1345
BSNT_02099___ 1343 CAGGCCTTTTAGCAGA------GGATGATGT-TCATGAGGAATATGTGCT 1385
|.|| ||| .||.||||| .|| |||.|||| |
BPUM_2984___u 1346 CGGG---------AGAATTGCTTGAAGATGTACCA----GAAGATGT--T 1380
BSNT_02099___ 1386 GCGTGAG-----TT--TATCCACTAT-ATGGTTGAGGTGGCAAGCGGCCA 1427
|.||.|| || |.||.|||.| | ||||.|||||.||.||..|
BPUM_2984___u 1381 GTGTTAGAAAAATTCATTTCAACTGTCA---TTGATGTGGCGAGTGGAAA 1427
BSNT_02099___ 1428 GCTTGTGAACCATGAAAAAAATGATTTCAGAGAACTCGCCATTTTTAAAT 1477
|.|..|.||.|||||||||||..||||.|||||.||.||.|||||.|||.
BPUM_2984___u 1428 GTTATTAAATCATGAAAAAAACCATTTTAGAGAGCTAGCTATTTTCAAAA 1477
BSNT_02099___ 1478 CGGGTGTGACGCTATAA 1494
|.|||||.||.||.|||
BPUM_2984___u 1478 CAGGTGTCACACTTTAA 1494
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