Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04932 and BPUM_2967

See Amino acid alignment / Visit BSNT_04932 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_04932___yvqH.1.24716.seq
#    -bsequence dna-align/BPUM_2967.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04932___yvqH-BPUM_2967.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04932___yvqH-BPUM_2967.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04932___yvqH
# 2: BPUM_2967
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity:     469/731 (64.2%)
# Similarity:   469/731 (64.2%)
# Gaps:         118/731 (16.1%)
# Score: 1341.0
# 
#
#=======================================

BSNT_04932___      1 ATGGTATTAAAAAGAATCAGAGATATGTTTGTTGC----GTCAGTTCATG     46
                     ||||||||.|.||||||.|||||||||||||||||    ||||    |||
BPUM_2967          1 ATGGTATTTAGAAGAATGAGAGATATGTTTGTTGCAACGGTCA----ATG     46

BSNT_04932___     47 AAGGACTT-GATAAAATGGAGAATCCAAAGGTGATGCTGAATCAATATGT     95
                      |||.||| |||||||||||||||||....||.|||||.|||||.||.||
BPUM_2967         47 -AGGGCTTAGATAAAATGGAGAATCCGCGTGTCATGCTAAATCAGTACGT     95

BSNT_04932___     96 ACGCGATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAAC    145
                     .||.||||||||...|||.||.||.|||||.||.||..|.||..|.||||
BPUM_2967         96 TCGTGATATGGAGGACGATATTGCCAAAGCGAAACATGCGATCATCAAAC    145

BSNT_04932___    146 AGCACACGATTGCCTATCAA--TTT--------AAGAAAAAATATGAAGA    185
                     ||||.|||||   ..|.|||  |||        |||.|       |||| 
BPUM_2967        146 AGCAGACGAT---ACAACAAGGTTTCCTGCGCAAAGCA-------GAAG-    184

BSNT_04932___    186 AGCCGCTGAAG---TGGCTGGCAAACGGAAAAATCAGGCACAGCTCGCAT    232
                     ||.||  ||||   |.||||..|||.|.||.||.|||||..||||.||||
BPUM_2967        185 AGACG--GAAGCATTTGCTGAAAAAAGAAAGAAGCAGGCTGAGCTGGCAT    232

BSNT_04932___    233 TTGACGCGGGTGAAGAAGAACTGG--CGAAAAAGGCGCTGACTGAAATGA    280
                     ||.||||.||.||||||||..|.|  ||||||  |||||.||.|||||||
BPUM_2967        233 TTCACGCAGGAGAAGAAGAGTTAGCACGAAAA--GCGCTCACAGAAATGA    280

BSNT_04932___    281 AGTATTTAGAAGGGAAGGCGGCTGAGCATA-----AAGCTTCCTATGAAC    325
                     |||||||.||| |.||.||..|.| |.|||     ||||||      |.|
BPUM_2967        281 AGTATTTTGAA-GAAAAGCATCAG-GAATATCAGGAAGCTT------ATC    322

BSNT_04932___    326 AGGCAAACAGT----CAGCTGGCTGATCTGAAAGAGCAGCTGGCTGCACT    371
                     | ||||.|.||    ||.||....||.||.||||||||..| ||.|||.|
BPUM_2967        323 A-GCAATCTGTGAAACAACTAAAAGAACTAAAAGAGCAAAT-GCAGCAGT    370

BSNT_04932___    372 T-GAAACAAAGCTTCAGGACGTAAAGGATAAAAAACAGGCGCTGATTGCG    420
                     | |||||.|||||.|..||..|.||.||.||.||.||||||||.||.||.
BPUM_2967        371 TAGAAACGAAGCTGCGTGATATTAAAGACAAGAAGCAGGCGCTCATAGCA    420

BSNT_04932___    421 CGGGCAAATGCGGCGAAAGCTAAAG-AGCATATGAA------TACGACAT    463
                     .|.||||||||.|| |.||..|||| ||||||||||      ||.||   
BPUM_2967        421 AGAGCAAATGCCGC-ACAGGCAAAGCAGCATATGAACGAATCTATGA---    466

BSNT_04932___    464 TTGACAAAATTGACAGTGAAAGCGCGTATCGTGAATTTTTACGTGTTGAA    513
                        |.|||.|.||.||||||||.||.|||...||||||.|.||..|.||.
BPUM_2967        467 ---ATAAAGTAGATAGTGAAAGTGCATATAAAGAATTTCTTCGAATGGAG    513

BSNT_04932___    514 AATCGTATTGAAGAAATGG-----AAATCCGCGCGAATTATTCAAAGTCA    558
                     ||.|||||.||||||||||     |||.|.| || |..|||.||.|.|..
BPUM_2967        514 AACCGTATCGAAGAAATGGAGACAAAAGCAG-GC-AGCTATGCACAATTT    561

BSNT_04932___    559 GCGGAAGCCGGCGCAGAACTTA----CACGTAAAGAATTCGCAGACGATG    604
                     ||.||....||.|||     ||    |||.||||..||  ||.||.||.|
BPUM_2967        562 GCAGATCAAGGAGCA-----TATGCTCACTTAAACTAT--GCCGATGAGG    604

BSNT_04932___    605 TGGAAGCAGAGATTGAAAAAAT-GCGGACACTTTCA--CT---GCAAAAA    648
                     |||||          |||.||| ||.||..|  |||  ||   |.|.||.
BPUM_2967        605 TGGAA----------AAAGAATGGCTGAAGC--TCAAGCTAGAGAAGAAG    642

BSNT_04932___    649 TCAGACCAGACA-CAAGCGGCAAATGAATAA    678
                     .|.||.||| || |||   |||||..||   
BPUM_2967        643 CCTGAGCAG-CAGCAA---GCAAACTAA---    666


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