Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04932 and BPUM_2967
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04932___yvqH.1.24716.seq
# -bsequence dna-align/BPUM_2967.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04932___yvqH-BPUM_2967.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04932___yvqH-BPUM_2967.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04932___yvqH
# 2: BPUM_2967
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity: 469/731 (64.2%)
# Similarity: 469/731 (64.2%)
# Gaps: 118/731 (16.1%)
# Score: 1341.0
#
#
#=======================================
BSNT_04932___ 1 ATGGTATTAAAAAGAATCAGAGATATGTTTGTTGC----GTCAGTTCATG 46
||||||||.|.||||||.||||||||||||||||| |||| |||
BPUM_2967 1 ATGGTATTTAGAAGAATGAGAGATATGTTTGTTGCAACGGTCA----ATG 46
BSNT_04932___ 47 AAGGACTT-GATAAAATGGAGAATCCAAAGGTGATGCTGAATCAATATGT 95
|||.||| |||||||||||||||||....||.|||||.|||||.||.||
BPUM_2967 47 -AGGGCTTAGATAAAATGGAGAATCCGCGTGTCATGCTAAATCAGTACGT 95
BSNT_04932___ 96 ACGCGATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAAC 145
.||.||||||||...|||.||.||.|||||.||.||..|.||..|.||||
BPUM_2967 96 TCGTGATATGGAGGACGATATTGCCAAAGCGAAACATGCGATCATCAAAC 145
BSNT_04932___ 146 AGCACACGATTGCCTATCAA--TTT--------AAGAAAAAATATGAAGA 185
||||.||||| ..|.||| ||| |||.| ||||
BPUM_2967 146 AGCAGACGAT---ACAACAAGGTTTCCTGCGCAAAGCA-------GAAG- 184
BSNT_04932___ 186 AGCCGCTGAAG---TGGCTGGCAAACGGAAAAATCAGGCACAGCTCGCAT 232
||.|| |||| |.||||..|||.|.||.||.|||||..||||.||||
BPUM_2967 185 AGACG--GAAGCATTTGCTGAAAAAAGAAAGAAGCAGGCTGAGCTGGCAT 232
BSNT_04932___ 233 TTGACGCGGGTGAAGAAGAACTGG--CGAAAAAGGCGCTGACTGAAATGA 280
||.||||.||.||||||||..|.| |||||| |||||.||.|||||||
BPUM_2967 233 TTCACGCAGGAGAAGAAGAGTTAGCACGAAAA--GCGCTCACAGAAATGA 280
BSNT_04932___ 281 AGTATTTAGAAGGGAAGGCGGCTGAGCATA-----AAGCTTCCTATGAAC 325
|||||||.||| |.||.||..|.| |.||| |||||| |.|
BPUM_2967 281 AGTATTTTGAA-GAAAAGCATCAG-GAATATCAGGAAGCTT------ATC 322
BSNT_04932___ 326 AGGCAAACAGT----CAGCTGGCTGATCTGAAAGAGCAGCTGGCTGCACT 371
| ||||.|.|| ||.||....||.||.||||||||..| ||.|||.|
BPUM_2967 323 A-GCAATCTGTGAAACAACTAAAAGAACTAAAAGAGCAAAT-GCAGCAGT 370
BSNT_04932___ 372 T-GAAACAAAGCTTCAGGACGTAAAGGATAAAAAACAGGCGCTGATTGCG 420
| |||||.|||||.|..||..|.||.||.||.||.||||||||.||.||.
BPUM_2967 371 TAGAAACGAAGCTGCGTGATATTAAAGACAAGAAGCAGGCGCTCATAGCA 420
BSNT_04932___ 421 CGGGCAAATGCGGCGAAAGCTAAAG-AGCATATGAA------TACGACAT 463
.|.||||||||.|| |.||..|||| |||||||||| ||.||
BPUM_2967 421 AGAGCAAATGCCGC-ACAGGCAAAGCAGCATATGAACGAATCTATGA--- 466
BSNT_04932___ 464 TTGACAAAATTGACAGTGAAAGCGCGTATCGTGAATTTTTACGTGTTGAA 513
|.|||.|.||.||||||||.||.|||...||||||.|.||..|.||.
BPUM_2967 467 ---ATAAAGTAGATAGTGAAAGTGCATATAAAGAATTTCTTCGAATGGAG 513
BSNT_04932___ 514 AATCGTATTGAAGAAATGG-----AAATCCGCGCGAATTATTCAAAGTCA 558
||.|||||.|||||||||| |||.|.| || |..|||.||.|.|..
BPUM_2967 514 AACCGTATCGAAGAAATGGAGACAAAAGCAG-GC-AGCTATGCACAATTT 561
BSNT_04932___ 559 GCGGAAGCCGGCGCAGAACTTA----CACGTAAAGAATTCGCAGACGATG 604
||.||....||.||| || |||.||||..|| ||.||.||.|
BPUM_2967 562 GCAGATCAAGGAGCA-----TATGCTCACTTAAACTAT--GCCGATGAGG 604
BSNT_04932___ 605 TGGAAGCAGAGATTGAAAAAAT-GCGGACACTTTCA--CT---GCAAAAA 648
||||| |||.||| ||.||..| ||| || |.|.||.
BPUM_2967 605 TGGAA----------AAAGAATGGCTGAAGC--TCAAGCTAGAGAAGAAG 642
BSNT_04932___ 649 TCAGACCAGACA-CAAGCGGCAAATGAATAA 678
.|.||.||| || ||| |||||..||
BPUM_2967 643 CCTGAGCAG-CAGCAA---GCAAACTAA--- 666
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