Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04924 and BPUM_2963
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04924___yvqC.1.24716.seq
# -bsequence dna-align/BPUM_2963.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04924___yvqC-BPUM_2963.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04924___yvqC-BPUM_2963.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04924___yvqC
# 2: BPUM_2963
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 466/659 (70.7%)
# Similarity: 466/659 (70.7%)
# Gaps: 46/659 ( 7.0%)
# Score: 1529.5
#
#
#=======================================
BSNT_04924___ 1 GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCT 50
.||||||||||..|.||.||.||.|||||.||||||||.|||||||||||
BPUM_2963 1 ATGATTCGAGTGCTTTTAATCGACGATCACGAAATGGTGAGAATGGGGCT 50
BSNT_04924___ 51 CGCGGCTTTTTTGGAGGCGCAGCCCGATATTGAAGTCATCGGCGAAGCAT 100
.||.||||||||.|||||.||..|.||||||||||||||.||.|||||.|
BPUM_2963 51 TGCTGCTTTTTTAGAGGCACAAGCTGATATTGAAGTCATTGGTGAAGCGT 100
BSNT_04924___ 101 CGGACGG-CAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGT 149
|.||.|| || ..|||||||...|||.||.|..|||.|...|||.|||||
BPUM_2963 101 CAGATGGACA-AAAAGGTGTAGAGCTAGCAGTTGAATTACGGCCAGATGT 149
BSNT_04924___ 150 CATTTTAATGGACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTAC-- 197
|||.||||||||.|||||||||||.||||||||||||||..||||.||
BPUM_2963 150 CATATTAATGGATCTTGTCATGGAAGGCATGGATGGCATCGAAGCAACGA 199
BSNT_04924___ 198 AAAGCAAATTTGCCGGGAGCTTTCTGACCCGAA--------AATTATTGT 239
|||| ||||||.|.|||..|| ||| ||||||.||
BPUM_2963 200 AAAG--AATTTGTCAGGAAATT--------GAAGATGCTCGAATTATCGT 239
BSNT_04924___ 240 GCTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTG 289
.||.||.|||||.|||||||||||.|||||.||.||.||.|||||.||.|
BPUM_2963 240 TCTGACGAGCTTTATTGATGATGATAAAGTTTATCCAGTGATTGAGGCAG 289
BSNT_04924___ 290 GCGCGCTCAGCTATCTGTTGAAAACCTCAAAAGCGGCAGAAATCGCCGAT 339
|.||..|.||.|||.|.||.|||||.||.||.||.|.||||||.||.|||
BPUM_2963 290 GTGCTTTAAGTTATTTATTAAAAACATCCAAGGCAGGAGAAATTGCAGAT 339
BSNT_04924___ 340 GCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAG-CTGGAGTCAAAAGTGG 388
|||||.||..|.|||||.|..||.||.|| ||| ||.||.||||||||.|
BPUM_2963 340 GCCATTCGGTCTGCAAGTATCGGCGAACC-AAGACTAGAATCAAAAGTAG 388
BSNT_04924___ 389 CGGGAAAAGTATT--ATCCAGGCTGCGCCACTCAGGTGAAAACGAGC--T 434
|.|||||.||..| || |..||.||.||.|| .|.|||..||.| |
BPUM_2963 389 CTGGAAAGGTGATGAAT--AAACTTCGTCATTC--CTCAAATGGATCAAT 434
BSNT_04924___ 435 CCCTCATGAATCGCTTAC-GAAACGGGAGCTCGAAATACTCTT---CCTG 480
||.||||||..|..|.|| |.|| ||||..|.|||| |||| .|||
BPUM_2963 435 CCTTCATGATGCATTAACAGCAA-GGGAAATGGAAA---TCTTGAAGCTG 480
BSNT_04924___ 481 ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTAC 530
||.||.||.||.||..|.||.||.|..||.|..||||||||.||.|||||
BPUM_2963 481 ATTGCCGATGGGAAATCGAATAAGGTCATCGCTGAGGAACTATTCATTAC 530
BSNT_04924___ 531 GATTAAAACAGTCAAAACACATATTACCAATATTTTATCAAAGCTGGATG 580
.|||||||||||.||.|||||||||||.||.|||.|.||.||.||.||||
BPUM_2963 531 AATTAAAACAGTGAAGACACATATTACGAACATTCTTTCCAAACTCGATG 580
BSNT_04924___ 581 TCAG-TGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCG- 628
| || .|||||||||||.|||||.|||||.||.||.||..||.|.|| |
BPUM_2963 581 T-AGAAGACCGGACGCAAGCGGCTGTGTATGCGCATCGTCATAAGCT-GA 628
BSNT_04924___ 629 -TGAATTAG 636
|.|||.|
BPUM_2963 629 TTCAATAA- 636
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