Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04923 and BPUM_2961
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_04923___gerAC.1.24716.seq
# -bsequence dna-align/BPUM_2961___gerAC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04923___gerAC-BPUM_2961___gerAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04923___gerAC-BPUM_2961___gerAC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04923___gerAC
# 2: BPUM_2961___gerAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1285
# Identity: 705/1285 (54.9%)
# Similarity: 705/1285 (54.9%)
# Gaps: 332/1285 (25.8%)
# Score: 1559.5
#
#
#=======================================
BSNT_04923___ 1 ATGAAAA----------------TCCGGATTTT-ATGTATGTTTATATGC 33
||||||| || |||| |.|...|||
BPUM_2961___g 1 ATGAAAAAGAAAGCAGCTTGTGCTC----TTTTGACGCTGGTT------- 39
BSNT_04923___ 34 ACCCTATTGCT--GTCCGGATGCTGGGACAGTGAGAATATCGAGGAATTA 81
|||.| || ||.||||||||.|||...|||||.|||||..|.
BPUM_2961___g 40 ------TTGTTAAGT--GGTTGCTGGGATAGTACAAATATTGAGGAGCTC 81
BSNT_04923___ 82 AGCTTAGTGATCGGAGTAGGGCTAGA----------CAAGCCTGACGATG 121
|.|.|.|..||.||..|.|.|.|||| |||| |||
BPUM_2961___g 82 AACATGGCAATTGGGTTTGCGGTAGATAAAGGAGATCAAG---GAC---- 124
BSNT_04923___ 122 AAAATTTAGAGCTGACACAGCAAATTCTCGTGCCGAAAAAAATCAGCGAG 171
|.||.|||.|||||.|...||||.|.||.||.||..||||.||
BPUM_2961___g 125 ATAAATTAAAGCTGTCTATGCAAGTCCTTGTTCCTCAAAAGAT------- 167
BSNT_04923___ 172 GGCTCTTCATCTGATC----------CGACACAG--CTTTCTA------- 202
||||| ||.||.|| |.|.|||
BPUM_2961___g 168 -----------TGATCAGGAAGCAAGCGTCAAAGACCCTACTAAAATTAT 206
BSNT_04923___ 203 --TCACAAAGGGTGAAACTGTCCATCAAATGATGAGAACCTCTGCATTAA 250
..|||||.||.||..||||.||||||||..|..|.||..|.|||.|.|
BPUM_2961___g 207 TGAAACAAACGGAGATTCTGTACATCAAATATTTCGCACTACGGCACTGA 256
BSNT_04923___ 251 AGCATAATCCTACGTTTTT----ACAGCA--TTTGCGTCTCATTCTGCTT 294
| ||.||..||..||| .||||| ||.|.||.|..||.| ||
BPUM_2961___g 257 A----AAGCCACCGCATTTTCGCGCAGCAGCTTAGGGTGTATTTAT--TT 300
BSNT_04923___ 295 TCCAAAAACGTGATTGCGGA--TCA--AATCGGAA------CGGATGCCA 334
|| ||.||| ||| |||..||| | |||..|.
BPUM_2961___g 301 TC------------TGAGGAACTCATCAATGAGAATAATTTC-GATCTCG 337
BSNT_04923___ 335 TTATTAACCAGTTTGTCAGAGACAACGGAAC---AAGGAGG-AGTTCCTA 380
|.|||||.||.||..|..|||||||||.||| || |||| || |||
BPUM_2961___g 338 TCATTAATCAATTCATTCGAGACAACGAAACGCGAA-GAGGTAG--CCT- 383
BSNT_04923___ 381 CGTCTTTATCACCAACGGCCGAA--CTAAGGATATAT--TTAACATGAAT 426
|||||||||.| ||.|.| .||| || |||.|.|| |.||.||.|||
BPUM_2961___g 384 CGTCTTTATGA-CATCTG-AGAAGCCT--GGAGACATGCTCAAAATCAAT 429
BSNT_04923___ 427 GATGA-AGACGAACCCGCATC--CAACGTGATATATGATCTGACAGAGAA 473
||||| .||| |.||.||.|| ||||.| ||||.||.||..|||||||
BPUM_2961___g 430 GATGACGGAC-AGCCGGCCTCATCAACCT--TATACGACCTTTCAGAGAA 476
BSNT_04923___ 474 TAATAAGGTGACGATCAGAATGATGGAGCCAGTTACATTGGGGGAGATCT 523
||..||...|||.||..|.|||.|..|..|.||..||||.||.||.||.|
BPUM_2961___g 477 TAGAAAATCGACCATTCGTATGTTCAAAACGGTCTCATTAGGAGATATTT 526
BSNT_04923___ 524 -----------CAGAACACT-TAACCTCTGACGATTCATTCC-----TCA 556
|||||||.| ||.|||.||..| |||| |.|
BPUM_2961___g 527 CTTCAGCCATGCAGAACAATGTATCCTTTGCGG-----TTCCGAAAGTTA 571
BSNT_04923___ 557 TCCCTCATGTCGGT-AAGGAAAACGGAAAGCTCGCGATAAACGGAGCCTC 605
.| ||||.| ||||||||..||.| |||| ||||.|||||
BPUM_2961___g 572 GC------GTCGATCAAGGAAAATTGATA-CTCG------ACGGCGCCTC 608
BSNT_04923___ 606 TATCATCAAAAATA----AATTATGGCACGGAGATCTCACCCCGATTGAG 651
|||.||.||.||.| |.||.| |||..|.|||| |.|||.|.|.|
BPUM_2961___g 609 TATTATTAAGAACAGACGATTTCT--CACCAATATCT--CTCCGTTAGCG 654
BSNT_04923___ 652 GTTCA-AAATATCAACTTATTTTCAGGCAATGTCGAGGGAGGCGTCATTG 700
||||| ..||| |||.||.||..|.|||.|||...|.||.||||||||||
BPUM_2961___g 655 GTTCAGTCATA-CAATTTGTTAACTGGCGATGGAAAAGGCGGCGTCATTG 703
BSNT_04923___ 701 ACTTGAAGCGCGATGGCCATC------TCTTTTCTTATAAAGTATATTCA 744
|.||.|| ..||| ||| |||.|||.|.|.| .||.||||
BPUM_2961___g 704 AATTTAA---ATATG---ATCACAGCATCTATTCCTTTGA--GATTTTCA 745
BSNT_04923___ 745 AGCAATCGGAAG------ATCAAGACGGCCTATAA----------GGACG 778
| ||| |||| |||||.| ||.|||| ||
BPUM_2961___g 746 A--AAT--GAAGCATCATATCAAAA---CCCATAAATCAGCCAGTGG--- 785
BSNT_04923___ 779 GAAAGTT--CAAATTCA-----CCGTCACCCGCACTATTGAAGGTCGTCT 821
|||.| |||.||.| |.||.||.| ||||.||.||..|
BPUM_2961___g 786 --AAGATACCAATTTGATGTGTCAGTGACGC------TTGATGGGCGATT 827
BSNT_04923___ 822 ATCTGAGGACTGGAATCCTAGTGAAGATTCGTTTAAGGATTCATAT---- 867
.|||||.||.||||||....|||||.||.|.|||||.||...||||
BPUM_2961___g 828 GTCTGAAGATTGGAATGAACGTGAAAATGCTTTTAATGAAAAATATCTCC 877
BSNT_04923___ 868 -----ATTAAAAGCATTGAAAAGACAGTCGA--AAAACAAGTACACAAAA 910
||..||.||.|||..|| || ||||| |.||
BPUM_2961___g 878 GAGAAATCGAAGGCGTTGTCAA-AC-GTCGATTAGAA------------- 912
BSNT_04923___ 911 CAGTAACG----ACATTTATTACA--GAGAAACTGCAGAAAGAGATCAAA 954
|||||.| |.|||| || |||.||.|.|||.|.|||||||||
BPUM_2961___g 913 -AGTAATGTGAAAGATTT----CATCGAGGAATTACAGCATGAGATCAAA 957
BSNT_04923___ 955 GCGGATGTGACCGGATTGGGAAACCAAGTCAGAATTC-ATTAT--CCT-- 999
||.|||.|...|||||| |.| |||.||..| |.||| |||
BPUM_2961___g 958 GCAGATATTTGCGGATT-------CTA-TCAAAAGGCGAGTATTGCCTAC 999
BSNT_04923___ 1000 -CAAAAGTGGA------AAAAGATCTCAAGAAAA----TGGGATGATGAT 1038
|.|| ||| ||||| |||.||| |||||||| |.
BPUM_2961___g 1000 CCGAA---GGATTTTCGAAAAG-----AAGCAAAACATTGGGATGA--AA 1039
BSNT_04923___ 1039 TATTTCAG-CAATGCGGAAATAGACTACCGGGTCAATGTGATTGTCAGAG 1087
| |||.|| .||| |.||.||..|.|||...|..||.||||...||.|.|
BPUM_2961___g 1040 T-TTTTAGTGAAT-CAGATATTCATTACAAAGCAAAAGTGAAAATCCGTG 1087
BSNT_04923___ 1088 ACTTCGGAACGAAAGGCGCAA-ACAA-----ATAA 1116
|||||||.||.||.||||||| |||| |||.
BPUM_2961___g 1088 ACTTCGGGACTAAGGGCGCAACACAATCCTTATAG 1122
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