Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04916 and BPUM_2955

See Amino acid alignment / Visit BSNT_04916 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_04916___yirB.1.24716.seq
#    -bsequence dna-align/BPUM_2955.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04916___yirB-BPUM_2955.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04916___yirB-BPUM_2955.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04916___yirB
# 2: BPUM_2955
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 177
# Identity:     119/177 (67.2%)
# Similarity:   119/177 (67.2%)
# Gaps:          24/177 (13.6%)
# Score: 361.5
# 
#
#=======================================

BSNT_04916___      1 ATGAGAGAATTGGACGAAATGATTAGCCGCTTGCGAAA--CAGAGGAATC     48
                     |||||||||.|.||.||.|||||.||.|||||  ||||  .|.||||||.
BPUM_2955          1 ATGAGAGAAATCGATGATATGATGAGACGCTT--GAAAGCAAAAGGAATT     48

BSNT_04916___     49 AAAGTGGAGAAAGTCAAATAT-CCGAAGCAGA----CCTTGTCAGAGAAA     93
                     .||||.||.||||||||| || |||||..|||    |.||    ||.||.
BPUM_2955         49 CAAGTAGAAAAAGTCAAA-ATGCCGAAAGAGACAACCATT----GAAAAG     93

BSNT_04916___     94 AAATGGGTTCATCAA---TGCA--AACAGCCGCTCAAAACAAATTACAGA    138
                     ||||||.|..|||||   .|||  ||.|     |||||.|.|..|||.|.
BPUM_2955         94 AAATGGATGTATCAAGCTGGCAAGAAAA-----TCAAAGCCACATACCGT    138

BSNT_04916___    139 GATTTTAACGGCTATTCTTTCACATAA    165
                     |||||.||.||.|||||.||||..|||
BPUM_2955        139 GATTTCAATGGGTATTCATTCATCTAA    165


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