Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04914 and BPUM_2953
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04914___cssR.1.24716.seq
# -bsequence dna-align/BPUM_2953___cssR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04914___cssR-BPUM_2953___cssR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04914___cssR-BPUM_2953___cssR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: BPUM_2953___cssR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 498/707 (70.4%)
# Similarity: 498/707 (70.4%)
# Gaps: 58/707 ( 8.2%)
# Score: 1676.5
#
#
#=======================================
BSNT_04914___ 1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT 50
|||||.||||||||||||.||||.||||||||..|.|||.|.||.|||||
BPUM_2953___c 1 TTGTCGTACACCATTTATTTAGTGGAAGATGAACAAAACTTAAACGAACT 50
BSNT_04914___ 51 GCTGACGAAGTATTTAGAGAATGAGGGCTGGAACATTACATCTTTT---A 97
..|.||.||.||||||||.|.|||....|||||..||.|.|||||| |
BPUM_2953___c 51 TTTAACCAAATATTTAGAAAGTGAAAATTGGAATGTTTCCTCTTTTTTAA 100
BSNT_04914___ 98 C----GAAA-GGTGAAGACGCCAGAAAGAA--AATG-ACA--CCGTCTCC 137
| |||| || .|||| ||| |||| ||| ||| ||
BPUM_2953___c 101 CCGGAGAAACGG----CACGC------GAAGCAATGAACAAGCCG---CC 137
BSNT_04914___ 138 CCACCTATGGATTCTTGATATCATGCTGCCGGATACCGACGGCTATACAT 187
.||.|||||||||.|.||||||||||||||.|||||.||.|||||.|||.
BPUM_2953___c 138 GCATCTATGGATTTTAGATATCATGCTGCCTGATACTGATGGCTACACAC 187
BSNT_04914___ 188 TAATAAAAGAAA-TCAAGGCGAAAGATCCTGACGTGCCGGTCATTTTTAT 236
|.||.||||||| |.|||.||.|..| ||||||||.|||||||||||.||
BPUM_2953___c 188 TCATTAAAGAAATTAAAGCCGCATCA-CCTGACGTACCGGTCATTTTCAT 236
BSNT_04914___ 237 TTCCGCCCGAGATGCGGATATTGACAGAGTGCTTGGCTTAGAGCTTGGCA 286
|||.||.||.|||||.|||||.||..|.||.|||||.||||||||.||.|
BPUM_2953___c 237 TTCAGCACGCGATGCAGATATCGATCGTGTCCTTGGGTTAGAGCTGGGAA 286
BSNT_04914___ 287 GCAATGACTACATTTCAAAGCCGTTTCTGCCGCGGGAGCTGATTATCCGT 336
|||.|||.||.|||.|.|||||.|||||.||.||.||||||||.||.||.
BPUM_2953___c 287 GCAGTGATTATATTGCGAAGCCATTTCTTCCACGCGAGCTGATCATTCGG 336
BSNT_04914___ 337 GTGCAAAAGCTGCTGCAGCTCGTATATAAGGA-AGC--TCCTCCTGTCCA 383
||||||||||||||..||||.|||||.||..| ||| |.|.||....||
BPUM_2953___c 337 GTGCAAAAGCTGCTTGAGCTTGTATACAAAAACAGCGATACACCGCAGCA 386
BSNT_04914___ 384 AAAAAATGAAATTGCCGTCTCCTCGTATCGGGTC---------GCTG-AA 423
..|||.||..|...||||||||||.||| ||| |.|| ||
BPUM_2953___c 387 GCAAAGTGTCACACCCGTCTCCTCCTAT---GTCATTCATGAGGATGTAA 433
BSNT_04914___ 424 GACGCCCGCGAGGTCTATGACGAAAACGGGA--ATATTATCAATTTGACG 471
|| |||||.|||| ||.|.|| |..|.||.|||||.||.
BPUM_2953___c 434 GA-------GAGGTGTATG-----AAGGAGATCAGCTCATTAATTTAACT 471
BSNT_04914___ 472 TCAAAGGAATTTGATCTGCTGCTATTATTTATCCATCATAAAGGGCATCC 521
||.|||||||||||..|||||||.|||||||..||.||..||||.|||.|
BPUM_2953___c 472 TCTAAGGAATTTGACTTGCTGCTTTTATTTACACACCACCAAGGACATGC 521
BSNT_04914___ 522 GTACTCTCGTGAGGATATCCTCCTAAAAGTGTGGGGGCATGACTACTTCG 571
.|..||||||||.|||||.|||.|.|||.|.|||||.||.||.|||||||
BPUM_2953___c 522 TTTTTCTCGTGAAGATATTCTCGTCAAAATTTGGGGACACGATTACTTCG 571
BSNT_04914___ 572 GAACAGACCGGGTCGTTGATGATCTCGTCCGGAGACTGCGCAGAAAGATG 621
|.|||||.||.||.||.|||||.||.|||.|..||.||||||.|||.|||
BPUM_2953___c 572 GGACAGATCGTGTGGTGGATGACCTTGTCAGACGATTGCGCAAAAAAATG 621
BSNT_04914___ 622 CCTGAATTGAAGGTGGAGACGATTTACGGTTTCGGCTACAGGTTGATGTC 671
||.||.||.|||||.|||||.||.||.||.||.|||||.|||.||.|...
BPUM_2953___c 622 CCCGACTTAAAGGTCGAGACCATCTATGGATTTGGCTATAGGATGCTAAA 671
BSNT_04914___ 672 ATCATGA 678
|..||||
BPUM_2953___c 672 AGGATGA 678
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