Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04887 and BPUM_2949

See Amino acid alignment / Visit BSNT_04887 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_04887___yusV.1.24716.seq
#    -bsequence dna-align/BPUM_2949.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04887___yusV-BPUM_2949.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04887___yusV-BPUM_2949.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04887___yusV
# 2: BPUM_2949
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity:     634/908 (69.8%)
# Similarity:   634/908 (69.8%)
# Gaps:          97/908 (10.7%)
# Score: 2304.0
# 
#
#=======================================

BSNT_04887___      1 ATGTATATAGAAAACGTGCAATACATAGTGCTGCTAAAAAGCCAGCAAAA     50
                                                                       
BPUM_2949          0 --------------------------------------------------      0

BSNT_04887___     51 AGGAGCGGTTATGGGTATGAGTGCAATTTCTACAGAAACGCTGAGCTTAG    100
                                     ||||||||.||||||||.|||....|.|||||||
BPUM_2949          1 ----------------ATGAGTGCCATTTCTACTGAAGGTTTAAGCTTAG     34

BSNT_04887___    101 GATACGGGGATGCCGTTATTATTGATGAGTTGAATTTAACAATTCCCAAA    150
                     |.|||||.||..|..|.||.||.|||||..|.|||.||.|.||.||.||.
BPUM_2949         35 GCTACGGAGAAACAATGATCATAGATGAACTAAATGTATCGATCCCTAAG     84

BSNT_04887___    151 GGTGAAATTACCGTATTTATTGGCAGCAATGGCTGCGGAAAATCGACACT    200
                     ||||||||.||.||||||||||||||||||||.|||||.|||||.||.||
BPUM_2949         85 GGTGAAATCACAGTATTTATTGGCAGCAATGGATGCGGTAAATCCACGCT    134

BSNT_04887___    201 TTTACGTTCATTAGCGCGCCTGATGAAGCCGAGAGGCGGTTCAGTGCTGC    250
                     ..|.||.||.||.||.||.||.||||||||.|..||.|||||.||.||||
BPUM_2949        135 ACTTCGCTCTTTGGCCCGTCTCATGAAGCCAATGGGTGGTTCTGTCCTGC    184

BSNT_04887___    251 TGGAAGGAAGAGCGATTGCCAAGCTTCCGACGAAGGAAGTCGCAAAAGAG    300
                     |.|||||.....|.|||||.||..|.||.||.||||||||.||.|||.||
BPUM_2949        185 TTGAAGGTCATTCCATTGCAAAATTACCAACAAAGGAAGTAGCGAAACAG    234

BSNT_04887___    301 CTCGCAATCCTGCCCCAAGGTCCTTCGGCTCCTGAGGGGCTGACGGTGCA    350
                     ||.||.||.||.||.|||||.||....||.||.||.||..|.||.|||||
BPUM_2949        235 CTTGCTATTCTTCCGCAAGGACCAGAAGCGCCAGAAGGATTAACCGTGCA    284

BSNT_04887___    351 TCAGCTGGTGAAGCAAGGAAGATATCCTTACCAAAACTGGCTGAAGCAGT    400
                     ||||||.|||||||||||.|||||||||||.|||||.|||||||||||||
BPUM_2949        285 TCAGCTAGTGAAGCAAGGCAGATATCCTTATCAAAATTGGCTGAAGCAGT    334

BSNT_04887___    401 GGTCAAAAGAGGATGAGGAAGCAGTTGAAAGAGCGCTT--AAAGCAACAA    448
                     |||||||..|.||.|||||||||||  .||..|.||||  ||..||||.|
BPUM_2949        335 GGTCAAAGCAAGACGAGGAAGCAGT--GAATCGTGCTTTGAAGTCAACGA    382

BSNT_04887___    449 AGCTTGAGGACATGGCTGACCGCGCCGTTGATTCTTTGTCAGGCGGACAG    498
                     ||.|.||.|||.|.|||||.||..|.||.|||||.||.|||||.|||||.
BPUM_2949        383 AGATGGAAGACCTTGCTGATCGAACGGTCGATTCATTATCAGGTGGACAA    432

BSNT_04887___    499 CGCCAGCGGGCTTGGATTGCGATGACGCTTGCCCAGGAAACGGATATCAT    548
                     .|.|||||.||.|||||||||||||||.|.||.|||||.|||||||||||
BPUM_2949        433 AGACAGCGTGCATGGATTGCGATGACGTTAGCGCAGGAGACGGATATCAT    482

BSNT_04887___    549 CCTTCTT-GACGAGCCGACGACGTATTTAGACATGACGCATCAAATTGAA    597
                      |||.|| ||.|||||||||||||||||||||||||||||||||||||||
BPUM_2949        483 -CTTGTTAGATGAGCCGACGACGTATTTAGACATGACGCATCAAATTGAA    531

BSNT_04887___    598 ATTCTTGATTTGCTGTTTGAGCTGAATGAAAAGGAAGGC--CGGACGATT    645
                     ||||||||..|.||||||||..|.||||||||.||  ||  ||.||||||
BPUM_2949        532 ATTCTTGACCTTCTGTTTGACTTAAATGAAAAAGA--GCAGCGCACGATT    579

BSNT_04887___    646 GTTATGGTACTCCATGACTTAAACTTGGCGTGCCGCTATGCACACCATCT    695
                     ||.|||||.||.||||||.|.||..|.||.||..|.|||||.||.||.||
BPUM_2949        580 GTCATGGTCCTTCATGACCTGAATCTCGCATGTAGATATGCTCATCACCT    629

BSNT_04887___    696 CGTGGCCATAAAAGACAA-ACGGATTTATGCAGAAGGCCGTCCGGAAGAG    744
                     .||.||.||.|||||||| || |||||||||||||||..|.||.|||..|
BPUM_2949        630 TGTAGCGATTAAAGACAAGAC-GATTTATGCAGAAGGAAGACCAGAAACG    678

BSNT_04887___    745 GTCATCACTTGTGATCTTGTGCAAAATGTGTTTTCTATGAACTGTCAGGT    794
                     |||||.|.|||||||||||||.|||||||.|||..|||||||||.||.||
BPUM_2949        679 GTCATTAATTGTGATCTTGTGAAAAATGTCTTTGATATGAACTGCCAAGT    728

BSNT_04887___    795 TAC-ACAGGACCCGCTCTTCGGAACGCCTCTTTGCATTCCTCATGGCAGG    843
                     .|| ||| ||.||..|.|||||||||||..|.||.|||||.||||||||.
BPUM_2949        729 GACAACA-GATCCTTTATTCGGAACGCCATTATGTATTCCGCATGGCAGA    777

BSNT_04887___    844 GGCAGATGCATTGTCCAGGAAGCG---GC-------TTTCACATCACATG    883
                     ||..|.||.|||||.|||.|||||   ||       ||||   ||.| ||
BPUM_2949        778 GGACGCTGTATTGTGCAGCAAGCGCAAGCGGAGACATTTC---TCGC-TG    823

BSNT_04887___    884 ---GATAA    888
                        |||||
BPUM_2949        824 CAAGATAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04887 and BPUM_2949

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
