Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04868 and BPUM_2942
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_04868___fadN.1.24716.seq
# -bsequence dna-align/BPUM_2942.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04868___fadN-BPUM_2942.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04868___fadN-BPUM_2942.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04868___fadN
# 2: BPUM_2942
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2598
# Identity: 1716/2598 (66.1%)
# Similarity: 1716/2598 (66.1%)
# Gaps: 360/2598 (13.9%)
# Score: 5553.0
#
#
#=======================================
BSNT_04868___ 1 ATGAAAGAAGAAACGAGTTTCATTTTTTTTGGTCAAAAAATGAATGATTA 50
BPUM_2942 0 -------------------------------------------------- 0
BSNT_04868___ 51 TTCATTCAATGTTCAAGGGGGATATCTCATGCACAAACACATTCGGAAGG 100
|||..||||||.|||||.||||
BPUM_2942 1 ----------------------------ATGGGCAAACATATTCGCAAGG 22
BSNT_04868___ 101 CAGCCGTTTTAGGATCGGGGGTAATGGGTTCCGGGATTGCGGCGCATTTG 150
||||.||..|.||.||.||.||.||||||||.||.|||||.||||||.|.
BPUM_2942 23 CAGCTGTCATTGGTTCAGGTGTCATGGGTTCAGGCATTGCTGCGCATCTA 72
BSNT_04868___ 151 GCTAACATCGGAATTCCTGTCCTGCTGCTAGATATTGTGCCGAACGATTT 200
||.||.|||||.||.||.|||....||||||||||||||||.|||||..|
BPUM_2942 73 GCCAATATCGGGATACCAGTCACATTGCTAGATATTGTGCCAAACGAACT 122
BSNT_04868___ 201 GACAAAGGAAGA---GGAAAAAAAGGGGCTGACGAAGG------------ 235
|||||||||||| ||.||||||| ||||.|
BPUM_2942 123 GACAAAGGAAGAAACGGCAAAAAAG-------CGAACGCTTGATCACCCT 165
BSNT_04868___ 236 ACAGTCCGGAGATGCGCAGCAGGCTGAGCCGGCAGGCGGTGAAAAAACTG 285
|..||.|||| || ||..|.||.|...|.|||.||.|||||.|.
BPUM_2942 166 AGTGTTCGGA-AT-------AGATTAAGTCAAGAAGCGATGGAAAAATTA 207
BSNT_04868___ 286 CTGAAACAAAAGCCCGCTCCCCTCACATCAGCGAAAAATACC--TCCTAT 333
.|.||.||||||||.||.||.||.||.||||| ||||.||| ||.||.
BPUM_2942 208 TTAAAGCAAAAGCCAGCACCTCTTACTTCAGC--AAAAAACCTATCATAC 255
BSNT_04868___ 334 ATTACACCGGGCAATCTGGAGGATGATGCAGAAAA---------ACTGAA 374
||.||||||||.||||| ..||||..| |.|..|
BPUM_2942 256 ATCACACCGGGAAATCT---------CACAGACCACCTTTCCTTATTACA 296
BSNT_04868___ 375 AGAAGCAGATTGGATTATTGAGGTCGTTGTCGAAAACCTTGAAG--TCAA 422
.|||||.||.|||||||||||.||||||...|||||.|| .|| ||||
BPUM_2942 297 TGAAGCTGACTGGATTATTGAAGTCGTTACTGAAAAGCT--CAGCATCAA 344
BSNT_04868___ 423 AAAGAAAATTTTCGCTCTTGTGGATGAACATCG-AAAGACTGGAAGCATC 471
||||.|..|.|||.||||..|.||.|||||.|| ||||| .||.||.|||
BPUM_2942 345 AAAGCACGTATTCTCTCTCATCGACGAACACCGCAAAGA-AGGCAGTATC 393
BSNT_04868___ 472 GTCTCAAGCAACACATCCGGCATATCAGTGCAGGAAATGGCTGAAGGCCG 521
||.||||||||.||||||||.||.||.||..|..|||||||.||||||||
BPUM_2942 394 GTATCAAGCAATACATCCGGAATTTCGGTTGAAAAAATGGCAGAAGGCCG 443
BSNT_04868___ 522 GTCGGATGATTTTAAAGCCCATTTTCTCGGAACGCATTTTTTTAATCCCG 571
.||.||.|||||||||..|||.|||.|.||.||.|||||||||||.||.|
BPUM_2942 444 ATCAGAGGATTTTAAACGCCACTTTTTAGGCACACATTTTTTTAACCCAG 493
BSNT_04868___ 572 CACGCTATTTAAAGCTGCTGGAGATCATTCCGATTAAGGAAACGGATCCT 621
|.||.|||||||||||..|.||.||||||||.|||.|.|||||.|||||.
BPUM_2942 494 CTCGTTATTTAAAGCTTTTAGAAATCATTCCTATTCAAGAAACAGATCCA 543
BSNT_04868___ 622 GA--TATTTTAAAGTTTATGAAAGCTTTCGGAGAAAATGTCCTCGGGAAA 669
|| ||.||.|| |||||||||.|.||.||.||..||||.||.||||||
BPUM_2942 544 GAAGTACTTCAA--TTTATGAAAACGTTTGGCGAGGATGTACTTGGGAAA 591
BSNT_04868___ 670 GGCGTTGTTACAGCAAAGGACACACCGAACTTTATCGCAAACCGAATCGG 719
|||||.|||..|||.||.||.||.|||||||||||.||.||.||.||.||
BPUM_2942 592 GGCGTCGTTGAAGCGAAAGATACGCCGAACTTTATTGCCAATCGCATTGG 641
BSNT_04868___ 720 GACTTACGGGCTTCTCGTGACAGTCCAAGAAATGCT------GAAAGGCG 763
.|||||.||.||.||.||.|||||.|..|||||||| .|||..|
BPUM_2942 642 TACTTATGGACTCCTTGTAACAGTGCGTGAAATGCTTGAAAACAAATAC- 690
BSNT_04868___ 764 GTTATCAGGTCGGGGAGGTTGATTCGATCACAGGACCGCTGATCGGCAGG 813
|.|| |.||.|||||.||||||.||||||||||.||.||.||.||.
BPUM_2942 691 ---ACCA--TTGGAGAGGTGGATTCGGTCACAGGACCCCTCATTGGAAGA 735
BSNT_04868___ 814 CCGAAAAGCGCCACCTTTAGAACGCTTGATGTGGTCGGCCTCGATACATT 863
|||||.||.||.||.||..|.||.||||||||.||.||.|||||.||.||
BPUM_2942 736 CCGAAGAGTGCGACGTTCCGTACACTTGATGTCGTAGGGCTCGACACGTT 785
BSNT_04868___ 864 CGCCCACGTTGCCCGAAATGTGTATGACAAAGCTGATGGCGATGAAAAAG 913
...|||.||.|||||.||.||.||||||.|||..||.||..|.|||||||
BPUM_2942 786 TTTCCATGTAGCCCGCAACGTATATGACCAAGTCGAAGGTAAGGAAAAAG 835
BSNT_04868___ 914 AAGTGTTTC-----GCCTTCCAAGCTTCATGAACGATATGCTGGAAAAAG 958
|..| |||| |||| .||.||..||||.|| |||||.|||||||
BPUM_2942 836 ATAT-TTTCCAGCTGCCT---GAGTTTATTGAAAGA-ATGCTTGAAAAAG 880
BSNT_04868___ 959 GGTGGATCGGAAGCAAGGCCGGCCAAGGCTTTTATAAAAAAGAAGGAAAA 1008
|.|||||.||.||||||||.||.|||||.||||||.|||||.|.|||||.
BPUM_2942 881 GATGGATTGGCAGCAAGGCAGGGCAAGGGTTTTATCAAAAAAATGGAAAG 930
BSNT_04868___ 1009 ACGATTTATGAGCTTGACCCAGTGACGCTTACTTACGGCGAGCGGACAAA 1058
.|.||||..||..||||.||.|||||.||.||.|||||.||.||.||.||
BPUM_2942 931 GCCATTTTAGAAATTGATCCTGTGACTCTCACATACGGAGAACGAACGAA 980
BSNT_04868___ 1059 AATGAA--ATCACCGGCACTTGAAGCGGCAAAACAGGCAAAAGGG-ACAA 1105
..|||| ||| |.|||| ||||...|||.||.|| ||||||||| ||.|
BPUM_2942 981 GCTGAAAGATC-CAGGCA-TTGAGATGGCGAAGCA-GCAAAAGGGAACGA 1027
BSNT_04868___ 1106 AAGCCAAAATGAAAGCGCTTATTTATTCGGATGACAGGGCCGGCCGTTTG 1155
||||.|||.|||||||||||||||||...||||...|.||.||||..|||
BPUM_2942 1028 AAGCGAAATTGAAAGCGCTTATTTATCAAGATGGGCGTGCAGGCCAATTG 1077
BSNT_04868___ 1156 CTGTGGAATATCACTTCTCAAACC----CTGCTTTACTCAGCCGAGCTGC 1201
||.|||||.||.||..| ||| ||.|||||.|||||..||
BPUM_2942 1078 CTCTGGAACATGACGGC----ACCTGTGCTCCTTTATTCAGCTCAG---- 1119
BSNT_04868___ 1202 TT----GGCGAGATTGCCGATGATATTCATGCGATTGACCAAGCCATGAA 1247
|| |||||.|||||.|||||||||||..|.||.||..|.||.|||||
BPUM_2942 1120 TTAACAGGCGAAATTGCAGATGATATTCAGTCCATCGATAACGCAATGAA 1169
BSNT_04868___ 1248 GTGGGGATTCGGCTGGGAACTGGGACCTTTTGAGATGTGGGACGCCATCG 1297
.||||||||.||||||.|||..||.||.||||||.|.|||||.||.||.|
BPUM_2942 1170 ATGGGGATTTGGCTGGCAACACGGTCCGTTTGAGCTCTGGGATGCAATTG 1219
BSNT_04868___ 1298 GCCTCAAGCAGTCAGCGGAAAAGC--TTGAGCAGCTTGG-AGCAGA---- 1340
|..|.|| |||||| |.||.| ||.||| ||||||
BPUM_2942 1220 GTGTGAA-----------AAAAGCAGTCGATC-GCATGGAAGCAGAAGGT 1257
BSNT_04868___ 1341 -----TATGCCTGGC--TGGATAAAAGAGATGCTGGATAAAGGAAATGAA 1383
.||.|| || |||.|..||||.|||.||....|||||.|.||.
BPUM_2942 1258 CACAGCATCCC--GCAGTGGGTGCAAGACATGTTGTCAGAAGGACACGAC 1305
BSNT_04868___ 1384 ACCTTCTACATCAAAGAGAACG--------GAACGGTATTTTATTATGAC 1425
||.|||| ||| |||||||.| ||.||.|..|| ||||.||
BPUM_2942 1306 ACATTCT--ATC-AAGAGAATGCTGATGGAGAGCGCTCGTT--TTATCAC 1350
BSNT_04868___ 1426 --CGCGGCGAAT--ACAGAGCCGTGAAAGAAAACAAAAAACGAATTCATT 1471
||.|||..|| |||| |..||||.||||.|||| |||| |||
BPUM_2942 1351 AACGGGGCTTATGAACAG----GAAAAAGGAAACGAAAA--GAAT--ATT 1392
BSNT_04868___ 1472 TAC-AAGC---ACTT---AAAGAAACAAAAGGCGTGATTGCGAAAAACAG 1514
|.| .||| | || |||||||| |.|||||||||...||||| .|
BPUM_2942 1393 TCCTTAGCGAGA-TTGAAAAAGAAAC--ACGGCGTGATTTTTAAAAA-TG 1438
BSNT_04868___ 1515 C-GGAGCAAGCTTAATTGACCTTGGAGATGATGTGGCCCTTCTTGAATTT 1563
| ||.||.|||||.|||||..|.||.||.|||||.|||.|.||.||||||
BPUM_2942 1439 CTGGTGCGAGCTTGATTGATATCGGTGACGATGTCGCCTTGCTCGAATTT 1488
BSNT_04868___ 1564 CATTCGAAAAGCAATGCGATCGGCCTCGATATCATTCAAATGATCCACAA 1613
||.||.|||||||||||.||.||.||.|||.|||||.|.|||||| |
BPUM_2942 1489 CACTCCAAAAGCAATGCCATTGGACTAGATGTCATTGACATGATC----A 1534
BSNT_04868___ 1614 A---------GGATTAGAGGAAACAGAACGGAATTACA-AGGGCCTTGTC 1653
| .|||.||..| ||||.||||||.| |||| ||||||
BPUM_2942 1535 ATCGCGCTGTTGATGAGGTG-----GAACAGAATTATAGAGGG-CTTGTC 1578
BSNT_04868___ 1654 ATCGGCAATCAAGGGAAAAATTTCTGCGTCGGCGCGAATCTCGCCATGAT 1703
|||||.||.|||||.||.||.|||||.||.||.||.||.||.||..||||
BPUM_2942 1579 ATCGGAAACCAAGGTAAGAACTTCTGTGTTGGTGCCAACCTTGCGTTGAT 1628
BSNT_04868___ 1704 CTTAATGGAAGTCCAAGATGACAACTTTTTGGAAGTTGATTTTGTGATAC 1753
.||||||||||..||.||.||.||.||.||.|||.||||.||||||||.|
BPUM_2942 1629 TTTAATGGAAGCTCAGGACGATAATTTCTTTGAAATTGACTTTGTGATCC 1678
BSNT_04868___ 1754 GCCGTTTTCAGGAGACGATGATGAAGATCAAATACAGTGCGAAACCG--- 1800
||||.||.|||.||.|.|||||||||.|.|||||.||.| ||||
BPUM_2942 1679 GCCGCTTCCAGCAGGCAATGATGAAGGTGAAATATAGCG----ACCGTCC 1724
BSNT_04868___ 1801 -GTTGTCGCCGCGCCATTTGGCATGACGCTCGGCGGAGGAACGGAAGTAT 1849
||.||.||.||.||.||.||.|||||.|||||.||.|||||.||.||.|
BPUM_2942 1725 AGTCGTTGCTGCACCGTTCGGTATGACACTCGGAGGCGGAACAGAGGTTT 1774
BSNT_04868___ 1850 GCCTGCCGGCGGCGC-GC-ATTCAAGCGGCAAGCGAAGCCTATATGGGCC 1897
|.|||||||| ||| || |||||.|||.|.||.|||||.||.|||||.|
BPUM_2942 1775 GTCTGCCGGC--CGCAGCTATTCAGGCGTCCAGTGAAGCGTACATGGGTC 1822
BSNT_04868___ 1898 TTGTTGAATCAGGTGTCGGCCTCATCCCTGGCGGAGGGGGAAACAAAGAG 1947
||||.|||.|.||.||.||.||.||.||.|||||.||.|||||||||||.
BPUM_2942 1823 TTGTCGAAGCGGGAGTTGGGCTGATTCCAGGCGGCGGTGGAAACAAAGAA 1872
BSNT_04868___ 1948 CTGTA-------CAT---CAA---TCATCTTCGCCGCGGCCTTGATCCGA 1984
.|.|| ||| ||| |||.||..|||| ||.||
BPUM_2942 1873 TTATATCTTCGCCATCTGCAAGGGTCAGCTAAGCCG---------TCAGA 1913
BSNT_04868___ 1985 TGA------------ATGCGGCAATGAAAACATTTGAAACGATTGCGATG 2022
|| ||||..|..||||||||||||||||.|||||.|||
BPUM_2942 1914 -GACCGCTATACAAGATGCCACGCTGAAAACATTTGAAACCATTGCAATG 1962
BSNT_04868___ 2023 GCGAAAGTGTCCGTTTCCGCTCAAGAGGCTCGTGAGATGAACAT-CTTAA 2071
||.|||||.|||..|||.||..|.||.||.||.||.|||||||| ||
BPUM_2942 1963 GCTAAAGTATCCACTTCGGCAGAGGAAGCGCGGGATATGAACATGCT--- 2009
BSNT_04868___ 2072 AAGAAACG-------GATCAGATCAGCGTGAATCAAGACCACCTGTTATA 2114
.|| ||.|..|||||..|||||...||.||||||.|.||
BPUM_2942 2010 -----GCGCGCGAGTGACCGAATCAGTATGAATGGTGATCACCTGATCTA 2054
BSNT_04868___ 2115 CGATGCGAAGCAGCTGGCCGCATCTCTAT--ACGATACCGGCTGGCG--- 2159
.||||||||.||.||.| .|| |||||.| |.||..|.||.|..||
BPUM_2942 2055 TGATGCGAAACAACTTG-TGC-TCTCTCTTGATGAAGCAGGTTATCGTGC 2102
BSNT_04868___ 2160 GCCGC-CTGTAAAAGAAAAGGTCAAGGTGCC------GGGAGAAACCGGT 2202
||||| | |||.|| |||||||| |||||||||.||.
BPUM_2942 2103 GCCGCTC-----AAGCAA-----AAGGTGCCCGTCATGGGAGAAACAGGC 2142
BSNT_04868___ 2203 TATGCGGCACT-CTTGCTTGGC-GCTGAGCAGATGAAGCTGTCCGGCTAT 2250
|||||.|||.| .|| ||||| |||||..|.||||...||||.||.||.
BPUM_2942 2143 TATGCAGCAATGATT--TTGGCGGCTGAAAATATGAGATTGTCTGGATAC 2190
BSNT_04868___ 2251 ATATCTGAGCATGATTTCAAGATCGCGAAAAAACTCGCTTATGTCATTGC 2300
||.||.||||||||..|.|..||.|..||||||.|.|||.||||.|||.|
BPUM_2942 2191 ATTTCAGAGCATGACATGACCATTGTTAAAAAATTAGCTCATGTTATTTC 2240
BSNT_04868___ 2301 GGGCGGAAAAGTGCCGTTTGGTACAGAGGTTGATGAAGAGTATTTATTGG 2350
.|||||||||.||||.|||||.||||||||.||.||..|.||.|||||.|
BPUM_2942 2241 CGGCGGAAAACTGCCATTTGGAACAGAGGTAGAGGAGCAATACTTATTAG 2290
BSNT_04868___ 2351 AGATCGAAAGAGAAGCGTTTTTGAGTTTGGCAGGAGAAGCAAAATCTCAA 2400
||.|.|||||||||||.|||||.|||.|.|.||||||||.||||||.|||
BPUM_2942 2291 AGCTTGAAAGAGAAGCATTTTTAAGTCTTGTAGGAGAAGTAAAATCACAA 2340
BSNT_04868___ 2401 GCGAGAATGCAGCATATGCTTGTGAAAGGTAAACCTTTACGGAATTAG 2448
||..|.||||||||.|||||.||.|||||.|||||||||||.||.||.
BPUM_2942 2341 GCACGCATGCAGCACATGCTCGTCAAAGGAAAACCTTTACGTAACTAA 2388
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