Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04867 and BPUM_2941
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:36
# Commandline: needle
# -asequence dna-align/BSNT_04867___yusK.1.24716.seq
# -bsequence dna-align/BPUM_2941.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04867___yusK-BPUM_2941.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04867___yusK-BPUM_2941.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04867___yusK
# 2: BPUM_2941
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity: 887/1203 (73.7%)
# Similarity: 887/1203 (73.7%)
# Gaps: 54/1203 ( 4.5%)
# Score: 3113.0
#
#
#=======================================
BSNT_04867___ 1 ATGAAAGAGGCAGTCATTGTGTCAGGTGCAAGAACACCGGTTGGAAAAGC 50
||||.|||.|||||||||||..|.||.|||||||||||.||.||.||.||
BPUM_2941 1 ATGAGAGAAGCAGTCATTGTCGCTGGCGCAAGAACACCAGTAGGGAAGGC 50
BSNT_04867___ 51 AAAAAAAGGATCGTTGGCCACC--GTTCGTCCGGATGATTTGGGAGCGAT 98
.|||||||||||||| ..|.| |||||.||.||||||.||||.|| ||
BPUM_2941 51 GAAAAAAGGATCGTT--AAAACATGTTCGGCCTGATGATATGGGCGC-AT 97
BSNT_04867___ 99 T-TGTGTAAAAGAGACACTGAAACGGGCAGGCGGTTACGAAGGTAATATT 147
| |||||||||||.|||.|.||.||.||.||.|.||||||.||..|.||.
BPUM_2941 98 TGTGTGTAAAAGAAACATTAAAGCGTGCTGGTGATTACGACGGACAGATA 147
BSNT_04867___ 148 GACGATTTGATTATTGGCTGTGCAACGCCTGAAGCGGAGCAGGGGCTTAA 197
||.||||||||.||.||.|||||.||.||.|||||||||||||||.|.||
BPUM_2941 148 GATGATTTGATCATCGGATGTGCGACACCAGAAGCGGAGCAGGGGTTAAA 197
BSNT_04867___ 198 CATGGCGAGAAATATCGGGGCGCTCGCGGGATTGCCATACACGGTTCCGG 247
..||||..|.|||||.||.|||.|.||.|||.|.||.||.||.||.||.|
BPUM_2941 198 TGTGGCTCGGAATATTGGAGCGTTAGCAGGACTTCCGTATACAGTCCCTG 247
BSNT_04867___ 248 CGATTACAGTCAACCGGTATTGCTCTTCAGGCCTTCAGTCTATTGCATAT 297
|.||.||..|.|||||.||.||.||.||.||.||||||||.||.||.|||
BPUM_2941 248 CCATCACCATTAACCGCTACTGTTCATCTGGTCTTCAGTCCATCGCTTAT 297
BSNT_04867___ 298 GCAGCAGAAAAAATTATGCTGGG---CGCCTACGATACAGCGATC---GC 341
||.|..|||..|||.|||||.|| .|| .||.||| ||| ||
BPUM_2941 298 GCGGGTGAACGAATCATGCTCGGTCAGGC---AGAAACA---ATCTTAGC 341
BSNT_04867___ 342 CGGCGGAGCAGAATCCATGTCGCAAGTTCCGATGATGGGGCATGTTACCC 391
|||.||||..|||||.|||||.|||||.||.||||||||.|||...|..|
BPUM_2941 342 CGGTGGAGTCGAATCAATGTCACAAGTACCAATGATGGGTCATTCCATTC 391
BSNT_04867___ 392 GTCCGAACCTTGC---TTTGGCAGAAAAGGCACCGGAATATTATATGAGC 438
||||||| ||| |||||||||..|.|||||.|||||.|||||||||
BPUM_2941 392 GTCCGAA---TGCTCATTTGGCAGAGCAAGCACCTGAATACTATATGAGC 438
BSNT_04867___ 439 ATGGGACACACAGCCGAGCAAGTCGCGAAAAAATA-CGGCGTCTCCCGTG 487
|||||.|||||.||.|||||.||.|||.||||.|| |.| |||.|.|||.
BPUM_2941 439 ATGGGCCACACGGCAGAGCAGGTGGCGCAAAAGTATCAG-GTCACTCGTC 487
BSNT_04867___ 488 AGGATCAAGACGCGTTTGCCGTTCGCAGCCACCAAAACGCCGCTAAAGCC 537
|.|||||.|||||.|||||.||..|.||.||.|||||.||.||.|||| |
BPUM_2941 488 AAGATCAGGACGCCTTTGCGGTAAGAAGTCATCAAAAGGCAGCCAAAG-C 536
BSNT_04867___ 538 CTTGCA-GAAGGAAAATTTAAAGATGAAATTGTACCCGTAGAAGTGAC-- 584
.||.|| |||||.|||||||.|||||||||||||.||||.||.||.||
BPUM_2941 537 ATTACAGGAAGGGAAATTTACAGATGAAATTGTATCCGTTGATGTAACAG 586
BSNT_04867___ 585 GGTGACAGAAATCGGAGAAGA---CCATAAGCATATGGAAAAACAGTTTG 631
.|.|||.|..|..||||.| | |.||.||.| |||.|.||.||..
BPUM_2941 587 AGCGACGGGTAGGGGAGCA-ATTTCAATTAGAA----GAACATCAATTCA 631
BSNT_04867___ 632 TGTTTTCTCAGGATGAAGGTGTTCGCCCGCAAACGACTGCAGACA-TCTT 680
.|||.||.|||||||||||.||..|..||...||.||.|.|||.| ||||
BPUM_2941 632 CGTTCTCACAGGATGAAGGCGTAAGAGCGGGGACAACGGAAGAGATTCTT 681
BSNT_04867___ 681 ATCGACATTGCGCCCGGCGTTTTCCGTTGAC----GGGACGGTGACTGCG 726
||.||.|||||.|||||.||||| .|| ||.||||||||.||.
BPUM_2941 682 -TCCACTTTGCGTCCGGCTTTTTC----AACAAAAGGCACGGTGACCGCA 726
BSNT_04867___ 727 GGCAATTCCTCGCAGACAAGTGACGGAGCGGCGGCTGTCATGCTGATGGA 776
||.||.||.||.||.|||||||||||.||.|||..|||.|||.|||||||
BPUM_2941 727 GGGAACTCTTCACAAACAAGTGACGGCGCTGCGTGTGTGATGATGATGGA 776
BSNT_04867___ 777 CCGGGAAAAAGCCGAT--GCTCTTGGCCTGGCGCCGCTTGTGAAATTCCG 824
.||.||.||||| || .|.|||..|||...||||||.|..||.|||.|
BPUM_2941 777 TCGAGAGAAAGC--ATCGTCACTTTCCCTTCAGCCGCTCGCCAAGTTCAG 824
BSNT_04867___ 825 CTCCTTTGCGGTAGGCGGCGTGCCGCCGGAAGTGATGGGAATCGGACCGG 874
..|.|||||.||.|||||.||.|||||.|||||||||||.|||||.||..
BPUM_2941 825 AGCGTTTGCTGTTGGCGGTGTACCGCCTGAAGTGATGGGGATCGGTCCAA 874
BSNT_04867___ 875 TGGAAGCGATTCCGCGCGCTTTGAAGCTTGCCGGACTTCAGCTGCAGGAC 924
|.|||||.|||||.||.||..||||..|.||.||||||.|||||.||||.
BPUM_2941 875 TTGAAGCCATTCCACGTGCGCTGAAAATCGCTGGACTTGAGCTGAAGGAT 924
BSNT_04867___ 925 ATCGGCTTGTTTGAACTGAATGAAGCTTTTGCCTCACAGGCCATTCAAGT 974
|||||..||||||||.|.||.|||||.||||||||.||||||||||||||
BPUM_2941 925 ATCGGACTGTTTGAATTAAACGAAGCGTTTGCCTCTCAGGCCATTCAAGT 974
BSNT_04867___ 975 AATCAGGGAATTGGGAATTGATGAAGAAAAAGTGAATGTCAACGGGGGCG 1024
.||..|..|.||.||||||||||||||.||||||||||||||.||.||.|
BPUM_2941 975 CATTCGTCATTTAGGAATTGATGAAGAGAAAGTGAATGTCAATGGCGGGG 1024
BSNT_04867___ 1025 CAATCGCGCTTGGACACCCGCTTGGCTGTACGGGCACGAAGCTTACACTC 1074
|||||||.||.|||||.|||||.||||||||.||.|||||..|.|||||.
BPUM_2941 1025 CAATCGCACTAGGACATCCGCTCGGCTGTACAGGAACGAAATTGACACTG 1074
BSNT_04867___ 1075 TCACTCATCCATGAAATGAAACGGAGAAATGAGCAATTTGGAGTCGTGAC 1124
||||||||.|||||||||||||||.||||.|||||||||||..||||.||
BPUM_2941 1075 TCACTCATTCATGAAATGAAACGGCGAAACGAGCAATTTGGCATCGTCAC 1124
BSNT_04867___ 1125 CATGTGTATCGGCGGCGGGATGGGAGCGGCCGGTGTATTTGAATT-ATGC 1173
.||||||||||||||.||.||||||||.||.||..|.|||||||| || |
BPUM_2941 1125 AATGTGTATCGGCGGGGGCATGGGAGCAGCAGGAATTTTTGAATTGAT-C 1173
BSNT_04867___ 1174 TAA 1176
|||
BPUM_2941 1174 TAA 1176
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