Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04854 and BPUM_2931
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04854___yusB.1.24716.seq
# -bsequence dna-align/BPUM_2931.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04854___yusB-BPUM_2931.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04854___yusB-BPUM_2931.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04854___yusB
# 2: BPUM_2931
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 513/680 (75.4%)
# Similarity: 513/680 (75.4%)
# Gaps: 22/680 ( 3.2%)
# Score: 1888.5
#
#
#=======================================
BSNT_04854___ 1 ATGTTTGAAAAATACTTCCCGAACGTTGATTTAACTGA----ATTATGGA 46
||||||||.||||..||.||||||||||||||| || ||| ||||
BPUM_2931 1 ATGTTTGAGAAATGGTTTCCGAACGTTGATTTA---GAAGTCATT-TGGA 46
BSNT_04854___ 47 ACGCGACATATGAAACACTTTATATGACGCTGATTTCTTTACTGTTTGCT 96
|.||.||...||||||..||||||||||.||.|||||.||...||||||.
BPUM_2931 47 ATGCAACGGGTGAAACGGTTTATATGACACTCATTTCATTGGCGTTTGCC 96
BSNT_04854___ 97 TTTGTCATCGGGGTCATCCTCGGCTTGCTGCTCTTTCTGACGAGCAAAGG 146
|||||.|||||..|.||.||.||..|.|||||.||.||.||..|.|||||
BPUM_2931 97 TTTGTGATCGGAATTATTCTTGGACTCCTGCTTTTCCTTACTGGAAAAGG 146
BSNT_04854___ 147 AAGCCTCTGGCAGAATAAAGCGGTCAACTCTGTGATTGCGGCCGTTGTTA 196
..|.||.|||.|.||||||.||.||||..||||.||.|..||.||.||.|
BPUM_2931 147 TGGTCTTTGGGAAAATAAACCGATCAATGCTGTCATCGGTGCAGTCGTCA 196
BSNT_04854___ 197 ACATATTCAGATCGATTCCGTTCCTTATTTTAATTATTTTACTATTAGGT 246
||||.||||||||||||||.||..|.||||||||||||.|..|||||||.
BPUM_2931 197 ACATTTTCAGATCGATTCCTTTTATCATTTTAATTATTCTTTTATTAGGG 246
BSNT_04854___ 247 TTTACGAAATTTTTAGTCGGC--ACGATCTTAGGGCCAAACGCCGCTTTG 294
||.||||||||.|||.| || ||.||..||||.|||||.||.||..||
BPUM_2931 247 TTCACGAAATTCTTAAT--GCATACAATTCTAGGTCCAAATGCAGCACTG 294
BSNT_04854___ 295 CCGGCGCTGGTAATCGGCTCGGCACCATTTTACGCGCGCCTTGTTGAAAT 344
||.||.||.||.||.||.||.||.|||||.||.||.||.|||||.|||||
BPUM_2931 295 CCTGCCCTTGTCATTGGGTCAGCTCCATTCTATGCACGTCTTGTCGAAAT 344
BSNT_04854___ 345 CGCGCTGCGTGAGGTGGATAAAGGTGTGATTGAAGC----CGCTAAATCA 390
.||||||||||||||.||.|||||.||.|||||||| ||| |||
BPUM_2931 345 TGCGCTGCGTGAGGTAGACAAAGGAGTCATTGAAGCAGCACGC----TCA 390
BSNT_04854___ 391 ATGGGCGCGAAAACGTCTACGATTATTTTCAAAGTGTTGATTCCGGAATC 440
|||||.|||||||||||.||.||.||.||||||||.|||.|.||.|||||
BPUM_2931 391 ATGGGAGCGAAAACGTCGACCATCATATTCAAAGTATTGCTGCCAGAATC 440
BSNT_04854___ 441 AATGCCTGCTCTTATTTCTGGCATTACGGTTACTGCCATCGCTTTGATCG 490
|.||||.||.||.|||||.||.|||||.||.||.||.||.|||||.||.|
BPUM_2931 441 ATTGCCAGCCCTCATTTCAGGTATTACCGTAACAGCGATTGCTTTAATTG 490
BSNT_04854___ 491 GCTCAACGGCAATTGCCGGAGCCATTGGTTCAGGAGGCCTTGGAAACCTT 540
|||||||.||.|||||.||.||.|||||..||||.||.|||||..|||||
BPUM_2931 491 GCTCAACTGCGATTGCAGGTGCAATTGGAGCAGGTGGACTTGGTGACCTT 540
BSNT_04854___ 541 GCGTACGTAGAAGGATATCAGTCTAATAACGCTGATGTTAC-CTTCGTTG 589
||.||.||.||||||||.||.|||..|||..|.|||||.|| ||| .|||
BPUM_2931 541 GCCTATGTGGAAGGATACCAATCTGGTAATACAGATGTCACACTT-TTTG 589
BSNT_04854___ 590 CTACTGTGTTTATTTTAATCATCGTGTTTATTATTCAAATCATCGGTGAT 639
|.||||||||||||.|.||||||||.||||||||||||||.|||||||||
BPUM_2931 590 CCACTGTGTTTATTCTCATCATCGTCTTTATTATTCAAATAATCGGTGAT 639
BSNT_04854___ 640 CTAATAACAAATATTATAGACAAACGATAA 669
.|.||.|||||||..||.||.|||||||||
BPUM_2931 640 TTGATTACAAATAAAATTGATAAACGATAA 669
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