Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04853 and BPUM_2930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04853___yusA.1.24716.seq
# -bsequence dna-align/BPUM_2930.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04853___yusA-BPUM_2930.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04853___yusA-BPUM_2930.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04853___yusA
# 2: BPUM_2930
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 844
# Identity: 638/844 (75.6%)
# Similarity: 638/844 (75.6%)
# Gaps: 41/844 ( 4.9%)
# Score: 2386.0
#
#
#=======================================
BSNT_04853___ 1 TTGAAAAAGCTATTTTTGGGTGCATTACTGCTTGTATTTGCAGGAGTCAT 50
.||||.||..|..||||..|||||.||.|.||.|.|||||||||..|..|
BPUM_2930 1 ATGAAGAAATTGATTTTAAGTGCACTATTTCTAGCATTTGCAGGCATTTT 50
BSNT_04853___ 51 GGCTGCCTGCGGT---TCGAATAACGGCGCTGAATCCGGCAAG------- 90
||||||.|||||| ||.|||||| |||||
BPUM_2930 51 GGCTGCATGCGGTTCATCTAATAAC-------------GCAAGTGATAGC 87
BSNT_04853___ 91 AAAGAAATTGTCGTTGCGGCAACAAAAACACCGCATGCGGAAATTTTAAA 140
|||...|||...|||||.||..||||||||||.|||||.||||||.|..|
BPUM_2930 88 AAAACCATTACGGTTGCCGCTTCAAAAACACCACATGCCGAAATTCTTGA 137
BSNT_04853___ 141 AGAAGCTGAACCATTGCTGAAAGAAAAAGGCTATACG--CTGAAAGTGAA 188
||||||..|||||.|.||.|||||||||||| |||| ||.||||||||
BPUM_2930 138 AGAAGCAAAACCACTTCTAAAAGAAAAAGGC--TACGATCTCAAAGTGAA 185
BSNT_04853___ 189 AGTGCTTAGTGATTACAAAATGTACAATAAAGCTTTAGCTGATAAAGAAG 238
|||.|||||||||||.|||||||||||.|||||.||||||||.|||||||
BPUM_2930 186 AGTACTTAGTGATTATAAAATGTACAACAAAGCGTTAGCTGAAAAAGAAG 235
BSNT_04853___ 239 TGGACGCGAACTACTTCCAGCACATTCCTTACCTTGAGCAAGAAATGAAA 288
||||.||.||||..|||||.||.||.||||||.|..|..||||||..|||
BPUM_2930 236 TGGATGCAAACTTTTTCCAACATATCCCTTACTTAAATGAAGAAAATAAA 285
BSNT_04853___ 289 GAAAACACAGATTACAAACTTGTGAATGCCGGCGCTGTTCACTTAGAGCC 338
..|||||.|||||||.|.||.||||.|||.||.||.||||||.|.|||||
BPUM_2930 286 TCAAACAAAGATTACGACCTAGTGAGTGCAGGTGCGGTTCACCTTGAGCC 335
BSNT_04853___ 339 ATTCGGTATTTACTCTAAAACATACAAATCACTGAAAGACCTTCCAGACG 388
|||||||||.||||||||.|.||||||||||.|.|||||..|||||.|||
BPUM_2930 336 ATTCGGTATCTACTCTAAGAAATACAAATCAGTAAAAGATATTCCAAACG 385
BSNT_04853___ 389 GTGCGACAATCATTCTGACAAACAACGTTGCTGAACAAGGCCGTATGCTT 438
|||..||.|||||..|||||||||||||.|||||.|||||.|||||||||
BPUM_2930 386 GTGGCACGATCATCATGACAAACAACGTAGCTGAGCAAGGACGTATGCTT 435
BSNT_04853___ 439 GCAATGCTTGAAAACGCTGG----ATTAATTACTCTTGACTCTAAA-GTT 483
||..|||||.||.|.||||| ||.|| |||| || ||.||| |||
BPUM_2930 436 GCCCTGCTTCAACATGCTGGTGTCATCAA--ACTC--GA-TCCAAAGGTT 480
BSNT_04853___ 484 GAAACAGTTGACGCAACATTG-AAAG-ACATTAAGAAAAACCCGAAAAAC 531
||.|||.|..||||.|| || |||| ||||.||..|||||||.||.|||
BPUM_2930 481 GATACAATCAACGCTAC--TGTAAAGAACATCAAAGAAAACCCAAAGAAC 528
BSNT_04853___ 532 CTTGAATTCAAAAAAGTAGCGCCTGAATTAACGGCAAAAGCATATGAAAA 581
||..|.|||||||||.|.||.||||||.||||.||.|||||.||||||||
BPUM_2930 529 CTAAAGTTCAAAAAAATCGCTCCTGAACTAACAGCGAAAGCTTATGAAAA 578
BSNT_04853___ 582 CAAAGAAGGAGACGCGGTCTTCATCAATGTAAACTATGCGATCCAAAATA 631
||..|||||.||.||.||.||.|||||.||.|||||||||||||||||||
BPUM_2930 579 CAGTGAAGGCGATGCTGTGTTTATCAACGTTAACTATGCGATCCAAAATA 628
BSNT_04853___ 632 AATTAAATCCTAAAAAAGATGCAATTGAAGTAGAATCAACGAAAAACAAC 681
||||.|||||.|||||.|||.||||.|||.|.||...|||.||.||||||
BPUM_2930 629 AATTGAATCCGAAAAACGATTCAATCGAACTTGAGCAAACAAAGAACAAC 678
BSNT_04853___ 682 CCATACGCTAACATCATCGCAGTAAGAAAAGGCGAAGAAGATTCTGCAAA 731
|||||.||.|||||..|.||.||..|.|||||.||||||.|.||.|..||
BPUM_2930 679 CCATATGCAAACATTGTGGCGGTTCGCAAAGGTGAAGAAAAATCAGATAA 728
BSNT_04853___ 732 AATCAAAGCGCTGATGGAAGTTCTTCACTCTAAAAAGATCAAAGACTTCA 781
.|||||..|..|.||||||||||||||||||.|.||.||||||||.||||
BPUM_2930 729 GATCAAGACTTTAATGGAAGTTCTTCACTCTGATAAAATCAAAGAATTCA 778
BSNT_04853___ 782 TCGAGAAAAAATACGACGGAGCTGTGCTTCCTGTATCTGAATAA 825
||||.||||||||.|||||.|||||.||.||.||||||||||||
BPUM_2930 779 TCGATAAAAAATATGACGGTGCTGTACTACCGGTATCTGAATAA 822
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