Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04844 and BPUM_2926
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04844___yurX.1.24716.seq
# -bsequence dna-align/BPUM_2926___sufD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04844___yurX-BPUM_2926___sufD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04844___yurX-BPUM_2926___sufD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04844___yurX
# 2: BPUM_2926___sufD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1324
# Identity: 999/1324 (75.5%)
# Similarity: 999/1324 (75.5%)
# Gaps: 20/1324 ( 1.5%)
# Score: 3641.5
#
#
#=======================================
BSNT_04844___ 1 ATGACACTAGGTACAAAACTATCCGTAGATCAGGAGTATCTCAAAAGCTT 50
||||||.|||..||.|||.||||.||||||||.||.|||.||||||||||
BPUM_2926___s 1 ATGACATTAGAAACGAAATTATCAGTAGATCAAGATTATGTCAAAAGCTT 50
BSNT_04844___ 51 TTCCGAAAAGCACCAAGAACCTGCCTGGCTGAAGAACCTGCGCTTACAGG 100
.|||||.|||||.||.|||||.||.|||.|||....|||.||||||||||
BPUM_2926___s 51 CTCCGAGAAGCATCAGGAACCGGCATGGATGAGTTCCCTTCGCTTACAGG 100
BSNT_04844___ 101 CTCTTGAACAAGCTGAGGATCTGCCGATGCCAAAACCTGACAAAACAAAA 150
||||||||.||||.||.||.||.||.||||||||.|||||||||||.||.
BPUM_2926___s 101 CTCTTGAAAAAGCAGAAGACCTTCCAATGCCAAAGCCTGACAAAACGAAT 150
BSNT_04844___ 151 ATCACAAACTGGAACTTCACGAATTTCGCGAAGCATACAGTGGATAACGA 200
||..|.||.|||||.||.||.||||||....||||||||||.||.|..|.
BPUM_2926___s 151 ATTTCTAAATGGAATTTAACCAATTTCAAACAGCATACAGTCGAAAGTGC 200
BSNT_04844___ 201 ACCGCTTTCTTCATTAGAAGATTTGACTGATGAAGTAAAAGCGCTGATCG 250
|||..||...|||||||||||..|..||||.|||||.|||.|.||.||.|
BPUM_2926___s 201 ACCATTTGGATCATTAGAAGAGCTTCCTGAAGAAGTGAAATCTCTCATTG 250
BSNT_04844___ 251 ACGTTGAAAACGAAGATAAAACATTATACGTACAGCGTGACCAGACGCCG 300
|..|.||..||...|||||.|||.|.|||.|.||||||||.||.|||||.
BPUM_2926___s 251 ATTTAGAGGACACCGATAAGACAGTTTACATTCAGCGTGATCAAACGCCA 300
BSNT_04844___ 301 GCATATCTTTCTCTTTCTCAAGAATTGAAAGACAAAGGCGTCATCTTCAC 350
||||||.|.||||||||...||||..|||||||||||||||.||||||||
BPUM_2926___s 301 GCATATTTGTCTCTTTCAACAGAAGCGAAAGACAAAGGCGTGATCTTCAC 350
BSNT_04844___ 351 TGATATTCTGACTGCTGC-ACGCGAGCACAGCGACTTGGTGGAGAAATAC 399
||||.|||..||.|| || .||.||.||..|.||..|.|||.||||||||
BPUM_2926___s 351 TGATCTTCATACAGC-GCTTCGTGAACATGGTGATCTAGTGAAGAAATAC 399
BSNT_04844___ 400 TTTATGAAGGACGGCGTGAAGGTTGACGAACATAAGTTAACTGCACTTCA 449
||.||||.|||.|..|||||.||.||.||.|||||..||||.||..|.||
BPUM_2926___s 400 TTCATGACGGATGCAGTGAAAGTAGATGAGCATAAACTAACAGCTTTACA 449
BSNT_04844___ 450 CGCGGCTCTTGTTAACGGAGGAGCATTCCTTTATGTTCCGAAAAATGTTC 499
.||.|||.|.||.||.||.|||||.|||||.|||||.|||||||||||
BPUM_2926___s 450 TGCTGCTTTAGTGAATGGTGGAGCTTTCCTCTATGTACCGAAAAATGT-- 497
BSNT_04844___ 500 AGG----TGGAGACGCCGGTTCAGGCTGTTTATGTCCACGAAAGCAATGA 545
|| ||.|| ||||..||||.||.||.||..|.||.||||.|.|.||
BPUM_2926___s 498 -GGAACTTGAAG-CGCCAATTCAAGCCGTCTACCTACATGAAAACGACGA 545
BSNT_04844___ 546 TACAGCTCTATTCAACCACGTGCTGATTGTGGCTGAAGACCACAGCTCTG 595
.||..||.|.||||||||.||..|..||||.||.||.||.||.||.||.|
BPUM_2926___s 546 CACGACTTTGTTCAACCATGTCATCGTTGTAGCAGATGATCATAGTTCAG 595
BSNT_04844___ 596 TCACATATGTAGAAAACTACATCAGCACTGTAAACCCGAAAGACGCTGTC 645
|.||.||||||||||||||||||||.||.|.|||.||..||||.|||.||
BPUM_2926___s 596 TGACTTATGTAGAAAACTACATCAGTACAGCAAAACCTGAAGAAGCTATC 645
BSNT_04844___ 646 TTCAATAT--TATCAGTGAGGTCATCACAGGTGATAATGCCAGCGTGACA 693
|||||||| |.|| .||.||..||||.||||.||||||..||||.||.
BPUM_2926___s 646 TTCAATATCGTGTC--CGAAGTGTTCACGGGTGCTAATGCTCGCGTCACT 693
BSNT_04844___ 694 TACGGTGCGGTGGATAATCTGTCAAGCGGTGTGACAACTTATGTGAACCG 743
||||||||.||.|||||.||.|||...|||||.|||..|||||||||..|
BPUM_2926___s 694 TACGGTGCAGTAGATAACCTTTCAGAAGGTGTCACAGTTTATGTGAATAG 743
BSNT_04844___ 744 CCGCGGTGCTGCGCGCGGACGCGACAGCAAAATCGAGTGGGCTCTTGGCC 793
.||||||...||..|.||.||.|||||.||||||||.|||||.||||||.
BPUM_2926___s 744 ACGCGGTATGGCAAGTGGCCGTGACAGTAAAATCGAATGGGCGCTTGGCT 793
BSNT_04844___ 794 TGATGAACGACGGCGAC-ACGATTTCCGAAAATACAACAAACCTTTACGG 842
|.|||||.||.||.||| .|| |.||.|||||.|..|||||.|||...||
BPUM_2926___s 794 TAATGAATGATGGAGACGTCG-TGTCTGAAAACATCACAAAGCTTATGGG 842
BSNT_04844___ 843 TGACGGCACATACGGTGATACGAAAACGGTTGTTGTCGGAAGAGGAGAGC 892
.|||||.||||.|||||||||.|||.|.||||||||.||..|.||..|.|
BPUM_2926___s 843 CGACGGGACATTCGGTGATACAAAATCAGTTGTTGTTGGCCGCGGGAATC 892
BSNT_04844___ 893 AAACAGAAAACTTCACAACACAAATCATCCATTTCGGTAAAGCTTCTGAA 942
||||.||||||||.||||||...||||||||.|||||||||...||||||
BPUM_2926___s 893 AAACGGAAAACTTTACAACAAGCATCATCCACTTCGGTAAAAACTCTGAA 942
BSNT_04844___ 943 GGCTATATCTTGAAGCACGGTGTGATGAAGGATTCCGCTTCTTCTATCTT 992
||.||||||||||||||.|||||.|||||||||...||.||.||||||||
BPUM_2926___s 943 GGGTATATCTTGAAGCATGGTGTCATGAAGGATCAAGCATCCTCTATCTT 992
BSNT_04844___ 993 TAACGGAATCGGCAAAATCGAACATGGCGCTTCTAAAGCGAATGCGGAGC 1042
||||||||||||.||||||||.||||||||..|.||..|.|||||.||.|
BPUM_2926___s 993 TAACGGAATCGGTAAAATCGAGCATGGCGCAACGAAGTCAAATGCTGAAC 1042
BSNT_04844___ 1043 AAGAATCACGCGTGCTGATGCTTAGCGAAAAAGCACGCGGAGACGCAAAC 1092
|.||||||||.||.||.|||||.||.||.|||||||||||.|||||||||
BPUM_2926___s 1043 AGGAATCACGTGTTCTCATGCTGAGTGAGAAAGCACGCGGTGACGCAAAC 1092
BSNT_04844___ 1093 CCTATTCTTTTAATTGACGAAGACGATGTAACTGCAGGACATGCGGCATC 1142
||.|||||.||||||||.|||||.||.|||||.|||||.|||||.||.||
BPUM_2926___s 1093 CCAATTCTATTAATTGATGAAGATGACGTAACAGCAGGGCATGCTGCTTC 1142
BSNT_04844___ 1143 TGTCGGCCGTGTGGACCCTATTCAGCTTTACTACCTGATGAGCCGCGGGA 1192
|||.||.|||||.||.||.|||||.||.||.|||||.||||||||.||||
BPUM_2926___s 1143 TGTTGGACGTGTCGATCCAATTCAACTGTATTACCTTATGAGCCGTGGGA 1192
BSNT_04844___ 1193 TTCCGAAAGAAGAAGCAGAACG-CTTAGTCATTTACGGATTCCTTGCA-C 1240
||.|.||||||||.||||||.| ||| ||.|||||.||.|| |||..| |
BPUM_2926___s 1193 TTTCCAAAGAAGATGCAGAAAGACTT-GTGATTTATGGCTT-CTTAAATC 1240
BSNT_04844___ 1241 CGGTAGTAAATGAACTTCCGATTGAAGGCGTTAAGAAACAATTAGTTTCT 1290
|.||.||.||.|||||.|||||||||||.|||||.||.||..|.||||||
BPUM_2926___s 1241 CAGTCGTCAAAGAACTGCCGATTGAAGGAGTTAAAAAGCAGCTTGTTTCT 1290
BSNT_04844___ 1291 GTTATCGAAAGGAAAGTGAAGTAA 1314
||.||.|||||||||||.||.|||
BPUM_2926___s 1291 GTGATTGAAAGGAAAGTAAAATAA 1314
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