Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04843 and BPUM_2925
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_04843___csd.1.24716.seq
# -bsequence dna-align/BPUM_2925___csd.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04843___csd-BPUM_2925___csd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04843___csd-BPUM_2925___csd.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04843___csd
# 2: BPUM_2925___csd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1240
# Identity: 942/1240 (76.0%)
# Similarity: 942/1240 (76.0%)
# Gaps: 38/1240 ( 3.1%)
# Score: 3480.0
#
#
#=======================================
BSNT_04843___ 1 ATGAATATCACAGATATTCGTGAGCAGTTCCCGATCCTTCATCAGCAAGT 50
||||||||||.|||..||||||||||.||.||.|||||||||||||||||
BPUM_2925___c 1 ATGAATATCAAAGACGTTCGTGAGCAATTTCCAATCCTTCATCAGCAAGT 50
BSNT_04843___ 51 GAACGGACATGATCTCGTTTATCTCGACAGCGCGGCGACTTCCCAGAAGC 100
|||||||||||||.|.||.|||.|.|||||.||.||||||||.||.||.|
BPUM_2925___c 51 GAACGGACATGATTTGGTGTATTTGGACAGTGCAGCGACTTCTCAAAAAC 100
BSNT_04843___ 101 C--GCGTGCTGTCATTGAAACACTGGATAAGTATTATAACC---AATACA 145
| |.||| ||||||||..||.||.||.|||||| ||| ..||||
BPUM_2925___c 101 CAAGAGTG--GTCATTGATGCAATGAATGAGTATT---ACCGGTCTTACA 145
BSNT_04843___ 146 ATTCCAATGTTCACCGGGGCGTCCATACACTTGGAACCAGAGCGACAGAT 195
|.||.||.||.|||.||||.||.|||||.|||||.||.|||||.||.||.
BPUM_2925___c 146 ACTCGAACGTCCACAGGGGTGTTCATACCCTTGGCACAAGAGCAACGGAC 195
BSNT_04843___ 196 GGTTATGAAGGAGCGCGTGAAAAAGTCCGCAAGTTTATTAACGCGAAGTC 245
|..||.||.||.|||.|.||.|||||.| ||..|||.|..||...|.
BPUM_2925___c 196 GCATACGAGGGTGCGAGAGAGAAAGTTC----GTGCATTCATCCGTGCTT 241
BSNT_04843___ 246 AATGGCT------GAGATTATTTTCACAAAAGGCACGACCACATCACTGA 289
.|| || |||||||||||.||.|.|||.||.||.||..||||.|
BPUM_2925___c 242 CAT--CTGTCCAGGAGATTATTTTTACGAGAGGTACAACAACTGCACTAA 289
BSNT_04843___ 290 ATATGGTGGCGTTAAGCTATGCGCGCGCCAACCTGAAACCTGGTGATGAA 339
|.|..||||||.|.||||||||..|.||.|||||.|||...||.|||||.
BPUM_2925___c 290 ACACAGTGGCGATCAGCTATGCTAGAGCAAACCTCAAAGAAGGCGATGAG 339
BSNT_04843___ 340 GTGGTCATCACCTACATGGAGCATCATGCGAATATCATTCCGTGGCAGCA 389
.|.|||||.||..||||||||||.||||||||||||||.||.||||||||
BPUM_2925___c 340 ATTGTCATTACGCACATGGAGCACCATGCGAATATCATCCCTTGGCAGCA 389
BSNT_04843___ 390 GGCTGTAAAAGCAACTGGCGCCACATTAAAATATATTCCGCTGCAGGAAG 439
.||.|.|||||||||||||||||||||.|||||.||||||.|.|||||||
BPUM_2925___c 390 AGCAGCAAAAGCAACTGGCGCCACATTGAAATACATTCCGTTACAGGAAG 439
BSNT_04843___ 440 ACGGAACGATTTCTTTAGAAGACGTCAGAG-AAACGGTCACA-AGCAACA 487
||||.|||.|.||..|.|||||.||.| || |||||.||||| |.||| |
BPUM_2925___c 440 ACGGCACGCTATCGCTTGAAGATGTGA-AGCAAACGATCACACATCAA-A 487
BSNT_04843___ 488 CAAAAATTGTTGCGGTGTCTCATGTATCTAATGTTCTCGGCACGGTCAAC 537
|.|||||.||.||.||..|.|||||.||.||.||..|.||.||..|||||
BPUM_2925___c 488 CGAAAATCGTCGCTGTCACACATGTTTCAAACGTATTAGGAACCATCAAC 537
BSNT_04843___ 538 CCGATTAAAGAAATGGCGAAAATCGCTCATGACAATGGGGCTGTCATTGT 587
|||||||||||.||.||.|||||.||.||.||..|.||.|||.|..|.||
BPUM_2925___c 538 CCGATTAAAGACATCGCAAAAATTGCCCACGATCACGGTGCTATTCTCGT 587
BSNT_04843___ 588 GGTGGACGGTGCACAAAGCACGCCTCACATGAAAATTGACGTGCAGGATC 637
.||.||.|||||.||.|||||.||.||||||.|||||||.||.|||||||
BPUM_2925___c 588 TGTCGATGGTGCGCAGAGCACCCCGCACATGCAAATTGATGTTCAGGATC 637
BSNT_04843___ 638 TCGATTGCGACTTCTTTGCGCTTTCTTCC----CATAAAATGTGCGGACC 683
|.|||||.|||| |||.|||.|||| | |||||||||||.|||||
BPUM_2925___c 638 TAGATTGTGACT--TTTTCGCATTCT--CTGGGCATAAAATGTGTGGACC 683
BSNT_04843___ 684 TACTGGCGTTGGTGTGCTGTACGGAAAGAAAGCCCTGCTGGAAAATATGG 733
.||||||.|.|||||.||.|||||.|||||.|.|||..||.|.|||||||
BPUM_2925___c 684 GACTGGCATCGGTGTACTTTACGGGAAGAAGGACCTTTTGAATAATATGG 733
BSNT_04843___ 734 AGCCTGCCGAATTCGGCGGTGAAATGATCGACTTTGTCGGGCTTTATGAA 783
|||||||.||.||.|||||||||||||||||||||||.|..||.|||||.
BPUM_2925___c 734 AGCCTGCTGAGTTTGGCGGTGAAATGATCGACTTTGTGGATCTGTATGAT 783
BSNT_04843___ 784 TCAACTTGGAAAGAGCTTCCGTGGAAATTCGAAGCGGGTACGCCGATTAT 833
||.||||||||||||||||||||||||||.|||||||||||.||||||||
BPUM_2925___c 784 TCTACTTGGAAAGAGCTTCCGTGGAAATTTGAAGCGGGTACACCGATTAT 833
BSNT_04843___ 834 TGCAGGAGCAATCGGTCTCGGTGCCGCCATTGATTTTCTCGAA-GCAATC 882
|||.||||||.|.||.|||||....||.||||| |||||..|| |..||.
BPUM_2925___c 834 TGCCGGAGCAGTTGGACTCGGAAAAGCGATTGA-TTTCTTAAATGACATT 882
BSNT_04843___ 883 GGTCTTGATGAGATTTCCCGCCATGAGCACAAGCTTGCAGCTTATGCGCT 932
|||.|.||.||..|...|||..|.|||||..|||||||..||||||||||
BPUM_2925___c 883 GGTATGGAGGAAGTCAGCCGTTACGAGCATCAGCTTGCCACTTATGCGCT 932
BSNT_04843___ 933 TGAACGCTTCCGCCAGCTTGACGGCGTAACGGTTTACGGGCCGGAAGAGC 982
|||||||||.....|||||||.||.|..||.|||||.||.|||.|..|.|
BPUM_2925___c 933 TGAACGCTTTAAGGAGCTTGATGGTGCGACTGTTTATGGACCGCAGCACC 982
BSNT_04843___ 983 GTGCCGGGCTTGTCACATTTAACCTTGATGATGTTCATCCGCACGATGTG 1032
|.||.||||||||.||.|||||..|.||||||||.||||||||.||||.|
BPUM_2925___c 983 GAGCTGGGCTTGTGACGTTTAATTTAGATGATGTCCATCCGCATGATGCG 1032
BSNT_04843___ 1033 GCGACTGTGCTTGATGCGGAGGGAATCG-CAGTCAGAGCCGGCCACCATT 1081
.|.|||||.||.|||.||||.||..||| ||.|| |.||.||.|||||||
BPUM_2925___c 1033 TCTACTGTTCTGGATACGGAAGGTGTCGCCATTC-GTGCAGGACACCATT 1081
BSNT_04843___ 1082 GTGCGCAGCCGCTGATGAAATGGCTGGATGTAACTGCTACTGCAAGAGCA 1131
||||.||||||||.|||||||||||.|.||||.|.||.||||||||||||
BPUM_2925___c 1082 GTGCACAGCCGCTCATGAAATGGCTTGGTGTATCAGCGACTGCAAGAGCA 1131
BSNT_04843___ 1132 AGCTTTTATCTGTATAATACAGAGGAAGAGATTGATAAGCTTGTGGAAGC 1181
|||||.|||||||||||||||||.|||||||||||.||.||..|.|.|||
BPUM_2925___c 1132 AGCTTCTATCTGTATAATACAGAAGAAGAGATTGACAAACTGATTGCAGC 1181
BSNT_04843___ 1182 TCTTCAAAAGACAAAGGAGTATTTTACAAATGTCTTTTAA 1221
.||.|..||||||||||||||||||||.||||||||||||
BPUM_2925___c 1182 GCTCCGTAAGACAAAGGAGTATTTTACGAATGTCTTTTAA 1221
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