Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04821 and BPUM_2907

See Amino acid alignment / Visit BSNT_04821 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_04821___yurI.1.24716.seq
#    -bsequence dna-align/BPUM_2907___end1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04821___yurI-BPUM_2907___end1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04821___yurI-BPUM_2907___end1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04821___yurI
# 2: BPUM_2907___end1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity:     604/921 (65.6%)
# Similarity:   604/921 (65.6%)
# Gaps:          96/921 (10.4%)
# Score: 1765.0
# 
#
#=======================================

BSNT_04821___      1 ATGACAAAAAAAGCATGGTTT----CTGCCGCT--CGTCTGTGTATTACT     44
                     |||   ||.|.|.|.|..|||    |||.||||  ||     ||||.| |
BPUM_2907___e      1 ATG---AAGAGAACTTTATTTGGAACTGTCGCTGCCG-----GTATCA-T     41

BSNT_04821___     45 GATTTCCGGATGGCTTG-CGCCTGCAGCTTCAGCAAGC-------GCGCA     86
                     |||.|.|||...|.|.| ||||  |.|||.|.||||||       ||.||
BPUM_2907___e     42 GATATTCGGTACGTTAGCCGCC--CCGCTACCGCAAGCTGCGAATGCTCA     89

BSNT_04821___     87 AACCGCATTAAGCCTTAATG-ACCGA--------TTGGCGTCTTCCCCTT    127
                     ||.|   ||.|..||.|||| |||||        .|..|.|.||||||.|
BPUM_2907___e     90 AAAC---TTTACTCTGAATGAACCGAGCCAAACGATCACATTTTCCCCGT    136

BSNT_04821___    128 -----CTGGAACAGGAAGCCTTCT-CTCATTAGCCG----CCCCCGCTGC    167
                          ||..||.|.||| .|.||| |.||..|..||    |..|||||.|
BPUM_2907___e    137 TACAGCTTCAAAACGAA-ACATCTGCACAACAAGCGAAAACTACCGCTTC    185

BSNT_04821___    168 ACCCTATGCTGACACA--GATACCTATTATGAAGGGGCTGAAGGTAAAAC    215
                     |        .|.||.|  |||.||||||||.||...|||.|.||.|||.|
BPUM_2907___e    186 A--------AGTCAAATCGATTCCTATTATCAATCTGCTAATGGCAAATC    227

BSNT_04821___    216 AGGAGACTCGCT----AAAAAGCACCCTGCACCGCATTATCAGCGGA-CA    260
                     ||  |||.||||    |.||||  |..|.|||...||||| .|..|| ||
BPUM_2907___e    228 AG--GACCCGCTCTCAAGAAAG--CTTTACACGATATTAT-TGATGATCA    272

BSNT_04821___    261 CACGATGCTGTCCTACAGCGAAGTGTGGAACGCGCTGAAAG-AAACGGAT    309
                     .|.|..|||.|||||||||.|.||.|||.|.|| ||.|||| ||||||||
BPUM_2907___e    273 TAAGCAGCTATCCTACAGCCAGGTTTGGGATGC-CTTAAAGAAAACGGAT    321

BSNT_04821___    310 GAAGATCCGAGAAATCCGAATAACGTCATCCTGCTCTATA-CGAATGAAT    358
                     ||||||||.|.||||||.||.|||||..||.|.||||||| || .||..|
BPUM_2907___e    322 GAAGATCCAAAAAATCCAAACAACGTGCTCTTACTCTATAGCG-GTGTCT    370

BSNT_04821___    359 CGCGGTCCAA--AAACCTGAACGGCGGCAATGTCGGCGATTGGAACCGCG    406
                     |.||.||.||  ||.|  .||.|||||.|||||.|||.|.||||||||.|
BPUM_2907___e    371 CTCGCTCAAAGCAATC--AAATGGCGGTAATGTTGGCCAGTGGAACCGGG    418

BSNT_04821___    407 AGCATGTCTGGGCGAAATCCCATGGCGATTTTGGCACGAGCAAGGGACCT    456
                     |||||||.|||||.||.||.||.|||.|||||||.||.|||.|.||.||.
BPUM_2907___e    419 AGCATGTGTGGGCTAAGTCACACGGCAATTTTGGGACAAGCCAAGGCCCA    468

BSNT_04821___    457 GGTACTGATATTCATCATTTGCGCCCGGCTGATGTTCAAGTTAACAGCGC    506
                     ||.||.|||.|.||||||.||||..|..|.||.||.|||...||.|||.|
BPUM_2907___e    469 GGGACAGATCTCCATCATCTGCGGGCAACAGACGTACAAACGAATAGCAC    518

BSNT_04821___    507 CAGAGGAAATATGGATTTTGACAATGGCGGCACTGAATATGCGAAG---G    553
                     ..|.||||||.|.||||||||.|..|||||.|.||||||   .|||   |
BPUM_2907___e    519 TCGTGGAAATTTAGATTTTGATATGGGCGGAAATGAATA---CAAGGGAG    565

BSNT_04821___    554 CACCCGGAAATTATTATGACGGCGATTCATGGGAGCCCC----GCGATGA    599
                     ||||.||.||||..|||||..|||||||||..||.||.|    .|||   
BPUM_2907___e    566 CACCAGGCAATTTCTATGATAGCGATTCATTCGAACCTCATAGCCGA---    612

BSNT_04821___    600 TGTGAAAGGCGATGTTGCCCGCATGCTGTTTTACATGGCTGTCCGTTACG    649
                      ||||||||.|||||.||..|.|||||.|||||.|||||.||.||.||||
BPUM_2907___e    613 -GTGAAAGGGGATGTGGCAAGAATGCTCTTTTATATGGCGGTACGATACG    661

BSNT_04821___    650 AGGGTGATGACGGCTATCCTGATCTTGAGCTTAATGATAAGACAG---GC    696
                     |.||.||||||.|||.|||||||.|.||..|.||.||.||   ||   ..
BPUM_2907___e    662 AAGGCGATGACCGCTTTCCTGATTTAGAATTAAACGACAA---AGTGAAT    708

BSNT_04821___    697 AACGGCTCAGCTCCTTATCATGGCAAACAATCTGTCCTGCTCGAATGGAA    746
                     ||||||...||.|||..|||.||.|||...||.||.||.|||.|.|||.|
BPUM_2907___e    709 AACGGCAGCGCCCCTCTTCACGGTAAAATGTCCGTACTTCTCAAGTGGCA    758

BSNT_04821___    747 TAAGCAGGATCCGGTTGACGACCGCGAGCGGAAAAGAAATGAAATCATTT    796
                     .||.||.||.||.||.||..|...|||.|||||..|.||.||.|||||||
BPUM_2907___e    759 CAAACAAGACCCTGTCGATCAAATCGAACGGAACCGCAACGAGATCATTT    808

BSNT_04821___    797 ATGAAAAATATCAGCACAACCGCAATCCATTTATCGACCACCCTGAATGG    846
                     ||.|||.|||.|||.|||||||||||||.||||||||.|||||.||||||
BPUM_2907___e    809 ATCAAACATACCAGAACAACCGCAATCCCTTTATCGATCACCCAGAATGG    858

BSNT_04821___    847 GCGGATGAGATTTGGCCGTAA    867
                     ||...||||||||||...|||
BPUM_2907___e    859 GCAAGTGAGATTTGGGAATAA    879


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04821 and BPUM_2907

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
