Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04817 and BPUM_2906
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_04817___yurG.1.24716.seq
# -bsequence dna-align/BPUM_2906.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04817___yurG-BPUM_2906.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04817___yurG-BPUM_2906.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04817___yurG
# 2: BPUM_2906
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1337
# Identity: 895/1337 (66.9%)
# Similarity: 895/1337 (66.9%)
# Gaps: 169/1337 (12.6%)
# Score: 2861.5
#
#
#=======================================
BSNT_04817___ 1 GTGTCAGGCAG---AAG---------------AGAATTATGC--ACCCCG 30
.||.|||..|| ||| |||| .||| |..||.
BPUM_2906 1 ATGACAGCAAGGGAAAGGATGGATAACGTGAAAGAA--CTGCAAATACCT 48
BSNT_04817___ 31 TTAAGAACGATTATGACGCCAGGGCCTGTTGAGGTTGATCCGCGTGTATT 80
|.||||||.||||||||.|||||.||||||||.||.|||||..|.||..|
BPUM_2906 49 TCAAGAACAATTATGACACCAGGACCTGTTGAAGTAGATCCAAGGGTGCT 98
BSNT_04817___ 81 AAGAGTAATGAGCACCCCGGTTGTCGGCCAATTTGATCCGGCGTTTACAG 130
..|.||||||||.||.||..||.||||.|||||||||||.||.||||||.
BPUM_2906 99 CCGTGTAATGAGTACGCCTATTCTCGGTCAATTTGATCCAGCATTTACAC 148
BSNT_04817___ 131 GTATTATGAATGAAACGATG--------GAGATGCTTCGGGAGCTGTTCC 172
..||.||||||||.|||||| |.|||.| ||.||||
BPUM_2906 149 AGATCATGAATGAGACGATGACCTTATTGCGATCC--------CTTTTCC 190
BSNT_04817___ 173 AAACAAAAAACCGCTGGGCATACCCGATTGACGGCACTTCACGGGCGGGA 222
|||||.||||....|||||.|..||||||||||||||.||.||..|.||.
BPUM_2906 191 AAACAGAAAATGAATGGGCTTTTCCGATTGACGGCACATCTCGTTCAGGG 240
BSNT_04817___ 223 ATTGAAGCAGTGCTGGCTAGTGTGATAGAGCCGGAAGAT--GA----TGT 266
.|.|||||.|||||.||.|||||.||.|||||||..||| || |||
BPUM_2906 241 CTAGAAGCTGTGCTTGCCAGTGTCATTGAGCCGGGTGATTCGATGCTTGT 290
BSNT_04817___ 267 GC---TCATTCCCATTTACGGCCGTTTCGGTTATTTGCTGACTGAAATCG 313
|| ||.|| |||||.||||||.||.|.||.|.||||||.|
BPUM_2906 291 GCCTGTCTTT---------GGCCGGTTCGGTCATCTTCTCATTGAAATAG 331
BSNT_04817___ 314 CCGAGCGATATGGGGCAAATGTTCATATGCTTGAGTGCGAATGGGGAACG 363
...||||.||||||||..||||.||||...|.||.||.||||||||||||
BPUM_2906 332 GACAGCGTTATGGGGCTGATGTACATACAATGGAATGTGAATGGGGAACG 381
BSNT_04817___ 364 GTTTTTGACCCGGAG-GACATCATACGGGAGATAAAAAAAGTGAAGCCGA 412
||||||||||| .|| ||.|||||.|.|||.||.|||.|.||||.|||.|
BPUM_2906 382 GTTTTTGACCC-TAGTGATATCATTCAGGAAATGAAACAGGTGAGGCCTA 430
BSNT_04817___ 413 AAATTGTGGCAATGGTGCATGGAGAAACATCGACAGGACGGATT-CACCC 461
||||.||.||.|||||.|||||.||||||||.||.|||| |||| ||.||
BPUM_2906 431 AAATCGTTGCGATGGTCCATGGTGAAACATCTACCGGAC-GATTGCAGCC 479
BSNT_04817___ 462 GCT---GAAAGCCATCGGCGAAGCCTGCCGCACCGA---GGATGCATTGT 505
||| |.|| ||.||.|||||.||||| .|| ||||||.||||
BPUM_2906 480 GCTTGAGCAA---ATTGGTGAAGCGTGCCG---AGAACTGGATGCGTTGT 523
BSNT_04817___ 506 TTATCGTCGATGCAGTCGCAACGATTG--GGGGCTGCGAGGTTAAAGTCG 553
|.||.||.||.||.||.|||||.|||| |||.|| .||||.|||||.|
BPUM_2906 524 TCATTGTAGACGCTGTAGCAACCATTGGCGGGACT--CAGGTAAAAGTGG 571
BSNT_04817___ 554 ATGAATGGAAGATTGACGCTGCCATCGGCGGAACGCAAAAGTGTTTGTCT 603
|.||||||||||||||.||.||.||.|||||.|||||.|||||.|||||.
BPUM_2906 572 ACGAATGGAAGATTGATGCAGCGATTGGCGGTACGCAGAAGTGCTTGTCG 621
BSNT_04817___ 604 GTGCCCTCAGGAATGGCGCCGATTACATATAATGAGCGGGTGGCGGACGT 653
||.||.|||||.|||.|.||.||.||.||||||||.||||||||.|..||
BPUM_2906 622 GTTCCATCAGGTATGTCTCCTATCACGTATAATGACCGGGTGGCAGCTGT 671
BSNT_04817___ 654 GATTGCAGCTCGCAAAAAGGTAGAACGCGGGATTGCGACACAAGCTGACA 703
..|||.|.|..|.||.||.||.|||...||.|||||.|||||.|.||| |
BPUM_2906 672 CGTTGAATCGAGAAAGAAAGTGGAAAAGGGAATTGCAACACAGGATGA-A 720
BSNT_04817___ 704 GTGAAGCGCTTTCG-GGAAATCGG--------CCGATCACAAGCAACTAC 744
.||.|| | |.|||| || ||.||||.||||||.|||
BPUM_2906 721 TTGCAG-------GAGCAAAT-GGATATTTCTCCAATCAAAAGCAATTAC 762
BSNT_04817___ 745 TTTGATTTGAGCCAGCTTGAGGATTATTGGAGCGAAAGACGGCTCAATCA 794
|||||..|.|||||||||.||||||||||||||...||.||..|.|||||
BPUM_2906 763 TTTGACCTTAGCCAGCTTCAGGATTATTGGAGCCCTAGGCGATTAAATCA 812
BSNT_04817___ 795 TCATACAGAAGCGACGACGATGCTGTACGC-CTTACGTGAGGGAGTCAGA 843
.||||||||||||||.||.|||||.||.|| ||| |||||.||.||..|.
BPUM_2906 813 CCATACAGAAGCGACAACAATGCTCTATGCACTT-CGTGAAGGGGTTCGT 861
BSNT_04817___ 844 CTGGTGCTTGAAGAAGGTCT---TGAGGCGCGTTTCGAGCGGCATCGG-- 888
.|.|||.|.||||||||||| ||| |||||||.|..||||| |
BPUM_2906 862 GTTGTGTTGGAAGAAGGTCTGTCTGA---GCGTTTCAAAAGGCAT--GCA 906
BSNT_04817___ 889 ---CACCATGAAGCCGCATTAGCAGCAGGGAT-AAAG--------GCAAT 926
|||.|..||||| || ||| |||| ||.||
BPUM_2906 907 TATCACGAGAAAGCC---TT---------GATGAAAGGCCTTGAAGCGAT 944
BSNT_04817___ 927 GGGGCTAAGATTGTTTGGAGAT-GACAGCTGCAAAATGCCTGTTGTCACC 975
|||.||...||||||.||.||| .||| .||.||||||||.|||||.||.
BPUM_2906 945 GGGACTTGAATTGTTCGGTGATCCACA-TTGTAAAATGCCAGTTGTGACA 993
BSNT_04817___ 976 TGTGTCGAAATTCCCGGCGGCATTGACGGCGATTCTGTCCGTGAC-ATGC 1024
|||.|.||.|||||..|.||.||.||.||.||..|.||.|||..| || |
BPUM_2906 994 TGTATTGAGATTCCAAGTGGTATAGATGGAGAGGCGGTACGTTCCGAT-C 1042
BSNT_04817___ 1025 TGCTGGCACAATTCGGTATTGAAATCGCCAGCTCATTCGGCCCGCTCGCA 1074
||||....||.||.||.||||||||.||||||||.||.||.|||||.||
BPUM_2906 1043 TGCTTAAGCATTTTGGCATTGAAATTGCCAGCTCCTTTGGACCGCTAGC- 1091
BSNT_04817___ 1075 GGGAAG-ATCTGGAGAATCGGCACGATGGGGTACAGCTGCAGAAAAGAAA 1123
.|||.| ||.||||||||.|||||.|||||.||.||.|||||||||||||
BPUM_2906 1092 TGGACGTATATGGAGAATTGGCACAATGGGCTATAGTTGCAGAAAAGAAA 1141
BSNT_04817___ 1124 ACGTGCTATTCGTGCTTGCCGGGTTAGAGGCTGTGCTTCTCAGACATAAC 1173
|.|||||.||.|||.|.||.|||.||||.||..|.||..|||.|||....
BPUM_2906 1142 ATGTGCTTTTTGTGTTAGCAGGGCTAGAAGCAATTCTAATCAAACACGGT 1191
BSNT_04817___ 1174 GCAGGAAT------CGAAGCAGGAAAAGCGCTCCAAGCAGCGCTGAATGT 1217
|||...|| ||..||||| |||.||.||.||.||...|.|
BPUM_2906 1192 GCATCCATCCATTGCGGCGCAGG------GCTTCAGGCGGCTCTTTCTAT 1235
BSNT_04817___ 1218 GTATGAA-AACGCTGGCCGCCAGGCAGCGGTG--TAA 1251
.|||||| || |||| |||
BPUM_2906 1236 CTATGAACAA------------------GGTGAATAA 1254
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