Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04792 and BPUM_2902
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_04792___yunF.1.24716.seq
# -bsequence dna-align/BPUM_2902.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04792___yunF-BPUM_2902.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04792___yunF-BPUM_2902.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04792___yunF
# 2: BPUM_2902
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity: 625/907 (68.9%)
# Similarity: 625/907 (68.9%)
# Gaps: 113/907 (12.5%)
# Score: 2128.5
#
#
#=======================================
BSNT_04792___ 1 GTGATTTATATCGGACTGACGGGGTGGGGGGATCATGACAGCATCTATCC 50
.||||||||||||||.|.||.||.|||||.|||||||||||..|.|||||
BPUM_2902 1 ATGATTTATATCGGATTAACTGGCTGGGGTGATCATGACAGTCTTTATCC 50
BSNT_04792___ 51 GCCGAAAA-CGGCCAGCCAGAAAAA---ATTGCAGGCCTATTCCTCCCAT 96
|||||||| ||| ||||..|.|||| .||.|| ||||||.||....
BPUM_2902 51 GCCGAAAATCGG-CAGCGCGCAAAAGCTGTTTCA---CTATTCGTCTACG 96
BSNT_04792___ 97 TTTCCGATCGTGGAATTAGATGCGAGCTTTTACGCGATTCAGCCGGCGCG 146
|||||.||.||||||.|.|||||.||||||||.||..|||||||.|..||
BPUM_2902 97 TTTCCCATTGTGGAACTGGATGCCAGCTTTTATGCCGTTCAGCCTGAACG 146
BSNT_04792___ 147 CAATAATGAAAAGTGGGTGAAGGAAACGCCCGAAACCTTCCAATTTATCG 196
.|||.|||||||||||.|.|||||.|||||.||.|||||.||||||.|.|
BPUM_2902 147 TAATCATGAAAAGTGGATCAAGGATACGCCAGATACCTTTCAATTTGTTG 196
BSNT_04792___ 197 TGAAAGCATATCAGGGCATGACAGGGCATCAGCGCGGCGAAATTCCCTTT 246
|.||.||||||||.||.|||||.||.||||||.|.|||||||||||.|||
BPUM_2902 197 TAAAGGCATATCAAGGGATGACCGGTCATCAGAGAGGCGAAATTCCGTTT 246
BSNT_04792___ 247 GACTCAAAAGAGGAGATGTTTGATGCGTTTAAGGTGTCTTTAACGCCATA 296
|..|||||.||.|||||||||||.||.||||...|.||.||.||.||
BPUM_2902 247 GCTTCAAAGGAAGAGATGTTTGACGCATTTATTCTTTCATTGACTCC--- 293
BSNT_04792___ 297 TTTACATAGC---------AA--TAAGCTCGCCATGGTGCTGTTTCAATT 335
|| || .||.||.||||||||.|||||||||||
BPUM_2902 294 --------GCTGATTCGTGAAGGGAAACTAGCCATGGTTCTGTTTCAATT 335
BSNT_04792___ 336 TCCGCCTTGGTTTGACTGCAAGAAGGAGAATGTCGCCTATTTGAGATGGT 385
|||.||.||||||||.|||||.||.|||.|.|||...|||||.|||||||
BPUM_2902 336 TCCACCATGGTTTGATTGCAAAAAAGAGCACGTCCTTTATTTAAGATGGT 385
BSNT_04792___ 386 GCAAGCACCAAATGGGAGATATCCCTTGTGCGCTTGAATTCAGAAACCGT 435
||||..|..|.|||||.||.||.||.|||||.||.||||||.|.|||||.
BPUM_2902 386 GCAAAGAGAAGATGGGTGACATTCCATGTGCCCTCGAATTCCGTAACCGC 435
BSNT_04792___ 436 TCCTGGTTCTCGCCGCCA------TTTTATGAGCAGACGCTT-TCATTTA 478
.|.||||||| || |||||||||||||| ||| |||||||
BPUM_2902 436 ACATGGTTCT------CAGATGAGTTTTATGAGCAGAC-CTTGTCATTTA 478
BSNT_04792___ 479 TGAAAGCGGAAGGCTGGATTCACAGTGTCTGTGATGAACCGCAAATCGGA 528
||.||...|||||.||||||||...|||.||||||||.||||||.|.|||
BPUM_2902 479 TGGAAAAAGAAGGATGGATTCATTCTGTTTGTGATGAGCCGCAAGTGGGA 528
BSNT_04792___ 529 GAAGGCAGCGTTCCGACTGT-------GTTGCGCGCGACCGATGAAAACA 571
||||||..|.|||||.|.|| |.|.||| |||| || |.|
BPUM_2902 529 GAAGGCTCCATTCCGCCCGTCATACAAGCTACGC---ACCG-TG---ATA 571
BSNT_04792___ 572 AAAC----GCTCGTCAGATTTCACGGACGCAACAAGCAGGGCTGGATGAA 617
|||| |.|||| ||||||||..|.||.||.|||||||||.|..|
BPUM_2902 572 AAACATTGGTTCGT----TTTCACGGGAGAAATAAACAGGGCTGGCTTCA 617
BSNT_04792___ 618 GCC------TGATGGCGGGAAAAACTGGCGGGAGGTCAGGTACTTATACC 661
.|| |.||| ||||.|||||.||.||..|.||||||||..
BPUM_2902 618 CCCAGCAGATCATG------AAAATTGGCGAGAAGTGCGATACTTATATT 661
BSNT_04792___ 662 GCTACAACCAACAGGAGCTG-----GAGGATTGGAAAAAGCACCT-GAAT 705
..||.|| .|.||||| .|.||.|||||||||.|.|| ||
BPUM_2902 662 TATATAA-----TGAAGCTGAATTAAAAGAGTGGAAAAAGAAACTCGA-- 704
BSNT_04792___ 706 GAAT--TGCAGCAGCAATGTAAGGATGTTTTTGTCCTGTTCAACAATAAT 753
.|| ||||.|||||||..||.|||||.|.||||.||||.||.|||||.
BPUM_2902 705 -CATTCTGCATCAGCAATCAAAAGATGTCTATGTCGTGTTTAATAATAAC 753
BSNT_04792___ 754 TCCGGCGGTGACGCTGCGGATAATGGCAAGCAGATGCTTGAACTGCTTGA 803
||||||||.||.||.||||..|||||..||||||||.||||..||||.||
BPUM_2902 754 TCCGGCGGAGATGCAGCGGCGAATGGTCAGCAGATGATTGATTTGCTGGA 803
BSNT_04792___ 804 TATCGAGTAC-------AGCGGACTTGCTCCGAGACAGCTCGATTTATTT 846
||| ||| ||| |||.||||||..|||.|.|||||| ||
BPUM_2902 804 TAT----TACGTATTCAAGC---CTTTCTCCGAAGCAGTTAGATTTA-TT 845
BSNT_04792___ 847 TAG---- 849
|||
BPUM_2902 846 TAGTTAA 852
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